Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0362.Seq
         (886 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.058
SB_9922| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.6  
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        29   3.8  
SB_24921| Best HMM Match : Pyr_redox (HMM E-Value=4.7e-15)             28   8.7  

>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 35.5 bits (78), Expect = 0.058
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = -2

Query: 159 SRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRR 4
           SR  R    +R P   R +R P P   S   R RS +PR R+  SR    RR
Sbjct: 228 SRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRSPTHRR 279


>SB_9922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 526 DFAEERLGCKSCIICVLKSRPDRANPAAHLHVH 624
           D A++++ CK C   V  SR + +N  AHL  H
Sbjct: 43  DTAQDKVMCKKCFAVVATSRGNTSNLIAHLRNH 75


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 147 RTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRN-KPSR 22
           R+ T  R+  T+ N R P P   S   R  S +PR R+  PSR
Sbjct: 543 RSYTSPRQRRTSPNNRSPPPRRRSPSPRRPSPSPRRRSTSPSR 585


>SB_24921| Best HMM Match : Pyr_redox (HMM E-Value=4.7e-15)
          Length = 256

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
 Frame = +1

Query: 421 EHSYTLGGCCA-QQHD---VPPRAR 483
           +H Y +G CCA QQ D   VPPRA+
Sbjct: 222 DHIYVIGDCCACQQPDGSWVPPRAQ 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,173,923
Number of Sequences: 59808
Number of extensions: 458824
Number of successful extensions: 1335
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)