Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0362.Seq
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   4.9  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    23   4.9  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    23   4.9  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    23   4.9  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    23   4.9  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    23   4.9  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    23   4.9  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    23   4.9  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    23   4.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   4.9  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    23   4.9  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    23   4.9  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   6.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.5  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 294 PRVSMMAKRLRNSYNYNN 347
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNSLSNNYNYNN 96


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 294 PRVSMMAKRLRNSYNYNN 347
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNSLSNNYNYNN 96


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 294 PRVSMMAKRLRNSYNYNN 347
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNSLSNNYNYNN 96


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 294 PRVSMMAKRLRNSYNYNN 347
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNSLSNNYNYNN 96


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 294 PRVSMMAKRLRNSYNYNN 347
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNSLSNNYNYNN 96


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 294 PRVSMMAKRLRNSYNYNN 347
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNSLSNNYNYNN 96


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 294 PRVSMMAKRLRNSYNYNN 347
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNSLSNNYNYNN 96


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 294 PRVSMMAKRLRNSYNYNN 347
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNSLSNNYNYNN 96


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 294 PRVSMMAKRLRNSYNYNN 347
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNSLSNNYNYNN 96


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 249 LSPCYGQAPALWPAAPRVSMMAKRLRNSYNYN 344
           ++PC      +    P  + MAK    +YNY+
Sbjct: 233 INPCIFDNATIVNNGPEAAKMAKAFTYTYNYS 264


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 294 PRVSMMAKRLRNSYNYNN 347
           P++      L N+YNYNN
Sbjct: 312 PKIISNNNSLSNNYNYNN 329


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 294 PRVSMMAKRLRNSYNYNN 347
           P++      L N+YNYNN
Sbjct: 312 PKIISNNNSLSNNYNYNN 329


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 294 PRVSMMAKRLRNSYNYNN 347
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNPLSNNYNYNN 96


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 457 VVHNSLPTYNCVLGEINL 404
           +V  S+PTY C LG+  L
Sbjct: 649 LVATSMPTYICYLGKAYL 666


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,376
Number of Sequences: 438
Number of extensions: 4170
Number of successful extensions: 31
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)