Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0362.Seq
         (886 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative ...    31   1.0  
At1g65670.1 68414.m07452 cytochrome P450 family protein similar ...    29   5.4  
At1g33670.1 68414.m04165 leucine-rich repeat family protein cont...    28   9.5  

>At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative
           similar to ubiquitin conjugating enzyme 6 from [Homo
           sapiens] GI:14029267, [Mus musculus] GI:14029263;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 237

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = -2

Query: 651 EFGARTWNPMNMKVRSRVSAVGTTLQNADDATLTAETLFSEIQEQHEASLLPDCRTPGTR 472
           +F   +WNPM   V S ++ + + + +    T +  T   E Q   ++SL  +C+TP  R
Sbjct: 92  DFHPESWNPM-WSVSSILTGLLSFMMDTSPTTGSVNTTVIEKQRLAKSSLAFNCKTPAFR 150

Query: 471 R 469
           +
Sbjct: 151 K 151


>At1g65670.1 68414.m07452 cytochrome P450 family protein similar to
           Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
          Length = 482

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 110 LAVPGRRASVVVLMSLLTALHRPEGDRRGC 199
           L   G + SV+  + LLT  H  EG RRGC
Sbjct: 137 LGSQGLKLSVMQDIDLLTRTHMEEGARRGC 166


>At1g33670.1 68414.m04165 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to receptor kinase-like
           protein GB:AAB82755 GI:2586083 from [Oryza
           longistaminata] (Science 270 (5243), 1804-1806 (1995))
          Length = 455

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 482 GVLQSGSKDASCCSWISL 535
           G+L S  KD  CCSW  +
Sbjct: 47  GILSSWQKDIDCCSWYGI 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,577,515
Number of Sequences: 28952
Number of extensions: 298860
Number of successful extensions: 854
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)