Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0358.Seq
         (941 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    29   1.3  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    28   2.2  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   8.8  

>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 54  SVGGGAWPFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTT 197
           ++  G    L  G + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 44  NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
 Frame = +1

Query: 193 RRIKILLRGTGVFEPHEIEQYRSVMPLDVLGRTRATLKES-ACSPWPRGPGNPL------ 351
           R++  L +   + +  E + ++++ P DV+ R++  LKES +   +    G PL      
Sbjct: 91  RQVLSLCQYPTLLDHAEEKWFQNLFPTDVVQRSKMLLKESGSLGAYSASQGIPLVRRHVA 150

Query: 352 KLLRAGDWGLQLSPINEEFLVSASHKLALITSL 450
             +RA D G    P +      ASH   LI +L
Sbjct: 151 DFIRARD-GFDCEPSDIYLTSGASHAARLIMTL 182


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 102  DKSLHQLRTAMHHHPPNQERAVNLSILPV 16
            D +LH     + +H  + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,585,419
Number of Sequences: 5004
Number of extensions: 68748
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)