Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0358.Seq
         (941 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909...    29   4.1  
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928...    29   7.1  
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260...    29   7.1  
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402...    29   7.1  
10_01_0085 + 1061962-1062141,1062283-1062431,1062734-1062819,106...    28   9.4  
07_03_1107 - 24024387-24024497,24025799-24026410                       28   9.4  

>11_08_0079 +
           28189782-28189907,28190445-28190553,28190876-28190958,
           28191500-28191562,28191658-28192854,28193247-28193310,
           28193338-28193426,28194404-28194463,28195442-28195547,
           28196057-28196069,28196940-28197111
          Length = 693

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +1

Query: 337 PGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSSAD 513
           PG  L + R G+ GL  + I +E  +S +HK   + SL   H     Y + +L +S AD
Sbjct: 284 PGQRLIIARGGEGGLGNACILKEMWLSKAHKEEEMASLSTGHPGTETYLILEL-KSIAD 341


>02_05_1011 +
           33487670-33487958,33490794-33492100,33492541-33492853,
           33493190-33494247
          Length = 988

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 336 PGQPAETPSCWGLGFAIIPHKRGIPSKRES*ARVDYVPALCTHRPSLLP--IE*FSEV 503
           PG+P +TP  W +  + +P +  +P+KR     VD      T R ++    I+ F EV
Sbjct: 443 PGEPRDTPRGWTVSPSGLPLRVSVPTKRGFTQFVDVGNVTATGRRNITGYCIDVFDEV 500


>02_01_0362 +
           2607097-2607371,2607766-2608612,2608842-2608910,
           2609968-2610202,2610454-2610536,2610924-2611046,
           2611326-2611379
          Length = 561

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 377 PQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKGITDLY 252
           PQ P    F GLP  +G  +H D  ++A   P  S  ++  Y
Sbjct: 278 PQKPVENFFKGLPYAVGD-QHGDWIAIAHQHPLLSMQLSHGY 318


>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
            42640431-42640607,42640853-42641617,42641697-42641791,
            42641889-42641951,42642047-42642135,42642229-42642324,
            42642457-42643104,42643596-42643628,42643838-42643912,
            42644442-42644603,42644604-42644674,42644758-42644815,
            42645196-42645394,42645487-42645552,42645699-42646183
          Length = 1310

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 403  PRLWGIIANPNPQHEGVSAGCPGL*ARENML 311
            P LW +++ P P+++ +  G PG   R  +L
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPGSADRPKLL 1140


>10_01_0085 +
           1061962-1062141,1062283-1062431,1062734-1062819,
           1062986-1063113,1063213-1063341,1063428-1063495,
           1063575-1063812
          Length = 325

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 328 PRGPGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFV 459
           P   G PL+LL  GDWG +    N+  +     K+A  T + FV
Sbjct: 31  PVAAGAPLRLLVVGDWG-RKGGYNQTRVAEQMGKVAEETEIDFV 73


>07_03_1107 - 24024387-24024497,24025799-24026410
          Length = 240

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 380 KPQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKGITDLYCSIS 240
           K ++PA  S +  PGP G G  ADS +       +S+    L CS S
Sbjct: 179 KAKAPAASSTADAPGPAGDGVAADSTACPICDVFSSRCAAYLDCSCS 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,471,937
Number of Sequences: 37544
Number of extensions: 538809
Number of successful extensions: 1190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)