Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0354.Seq
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    28   1.6  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    28   2.1  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    27   2.8  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   3.7  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    27   4.9  
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy...    26   6.5  
SPAC3A12.13c |||translation initiation factor eIF3 complex subun...    26   6.5  

>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -2

Query: 457 EDPESPAKSDEDSGLDSDTESELPGK---LKNVQVSSLLSDMEKIKQELIKNN 308
           ++P +PA     SGL  D  SE+  K    KN    ++L+D E   Q L+ +N
Sbjct: 642 KEPFTPAVPSAKSGLKKDQSSEVANKDVVSKNKDNIAILADREARPQLLLDDN 694


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1147

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = -2

Query: 457  EDPESPAKSDEDSGLDSDTESELPGKLKNV-QVSSLLSDMEKIKQE--LIKNNEYEKLKE 287
            E+     KS+ED+ L++        +   + +V  +LS ++ +     L+KN   +  KE
Sbjct: 1045 ENISDKLKSEEDTSLETPIHENQSIQSDQIKEVGEVLSAIKSLSDSVMLLKNQIDDLAKE 1104

Query: 286  KCRRSDSDEE*TN 248
            K   S SD+E  N
Sbjct: 1105 KLPLSSSDDEKVN 1117


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = -2

Query: 439 AKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCRRSDSDE 260
           + + + S +D D+E ELP   K   ++S  +D      E+  ++E +   +K + +  +E
Sbjct: 12  SSTSKRSVIDDDSEPELPSMTKEA-IASHKADSGSSDNEVESDHESKSSSKKLKENAKEE 70

Query: 259 E 257
           E
Sbjct: 71  E 71


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -3

Query: 588 GDREDPSENSSHGMHDDNVPKAYRLGRNLTVLMKA 484
           G+   P    S+G H  NVP   +L  N  V   A
Sbjct: 385 GNTSSPVSRFSYGQHTSNVPSTQKLPSNFRVTQGA 419


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -2

Query: 460 PEDPESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKC 281
           P  P    +  + +    D  ++LP  +   +    L  M++I   L+   EY + +E+ 
Sbjct: 33  PPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQERL 92

Query: 280 RRSDS-DEE*TNRI 242
           +  D   +E  NR+
Sbjct: 93  KPQDERTQEERNRV 106


>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 343 MEKIKQELIKNNEYEKLKEKCRR 275
           MEK++QELIK    +KL ++ ++
Sbjct: 181 MEKVRQELIKEATAKKLSQQAKK 203


>SPAC3A12.13c |||translation initiation factor eIF3 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = -2

Query: 457 EDPESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCR 278
           EDP  PA+ D   G DS + S+ P K  + +      D E+ K+ L   N+   + +K  
Sbjct: 10  EDPAKPAEFDFPLGKDSQSSSK-PKKRFDDEED---EDEEENKESL--QNDSHSVSQKSS 63

Query: 277 RSDSDEE*TNRI 242
            S  +++ +N++
Sbjct: 64  SSSQNDQGSNKM 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,742
Number of Sequences: 5004
Number of extensions: 48592
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)