Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0354.Seq
         (911 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758...    33   0.24 
02_01_0284 + 1907249-1907665,1907816-1907859,1909508-1909546,190...    32   0.73 
09_02_0181 - 5425833-5426527,5426667-5429397                           31   1.7  
06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168           29   3.9  
06_01_0043 - 412675-412798,412891-412997,413104-413197,413733-41...    29   6.8  
05_06_0263 + 26752759-26754393                                         28   9.0  
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879...    28   9.0  

>02_02_0184 -
           7581345-7581769,7581880-7582296,7582891-7583661,
           7583894-7584437,7584794-7584961,7585019-7585101,
           7585190-7585631
          Length = 949

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -2

Query: 460 PEDPESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYE-KLKEK 284
           P  PE  A +D D GLD D E+  PG         L  D+E+     +  +  E + +++
Sbjct: 707 PYFPEPNAAADLDGGLDGDAEASFPGSNPEADGRELDGDLEQDHSLFMFLDPGEVRCRKR 766

Query: 283 CRRSDSDE 260
            R S+ D+
Sbjct: 767 LRASEEDD 774


>02_01_0284 +
           1907249-1907665,1907816-1907859,1909508-1909546,
           1909791-1910112,1910803-1910892,1911541-1911609,
           1911969-1912074,1912146-1912234,1912349-1912461,
           1912555-1912657
          Length = 463

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
 Frame = -2

Query: 457 EDPESPAKSDEDSG-LDSDTESELPG-KLKNVQVSSLLSDME--KIKQELIKNNEYEK-L 293
           +   SP++   D G +  D    L   KLK+ ++ SLL+D E  K+ ++L + N+Y + L
Sbjct: 242 DSTSSPSEQTSDGGEVYGDPSENLNSRKLKSDELKSLLADSERSKLLKKLSEANQYNRFL 301

Query: 292 KEKCRRSDSD 263
           K + +  D+D
Sbjct: 302 KRQLQMKDND 311


>09_02_0181 - 5425833-5426527,5426667-5429397
          Length = 1141

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +1

Query: 385  PAAPTRCRCLGRCPRPIWPATRDPRDP 465
            P AP RCRC   C R   PA R  R P
Sbjct: 1096 PRAPARCRCRMACRRKARPAGRARRRP 1122


>06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168
          Length = 536

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 719 CGRQSLSAGNNTXTVKTRGVXXVPENWDNFVRTGNV 826
           CG  S+S G N   V   G+  +P  W   +RTG +
Sbjct: 149 CGGFSMSWGTNHLLVDGHGLTALPTAWAEMLRTGGL 184


>06_01_0043 -
           412675-412798,412891-412997,413104-413197,413733-413820,
           413902-413943,414117-414223,414812-414942
          Length = 230

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -2

Query: 454 DPESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKE 287
           +P S  +SDED   D DTE+ L  +L+ ++      ++ K +Q+     E  K+KE
Sbjct: 116 EPRSDDESDEDDDDDDDTEA-LMAELERIKKERAEENLRKERQQA---EEEAKMKE 167


>05_06_0263 + 26752759-26754393
          Length = 544

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 454 DPESPAKSDEDSGLDSDTESELPGKLKNVQV 362
           DPE  A+ DE+   + + + EL  KL++++V
Sbjct: 510 DPEGEAEDDEEEEEEEEDDGELDSKLQSLKV 540


>02_04_0481 +
           23284296-23284448,23284553-23284753,23284855-23287971,
           23288510-23289353,23289468-23290120,23290573-23290676,
           23290898-23291000
          Length = 1724

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 406 DTESELPGKLKNVQVSSLLSDMEKIKQEL-IKNNEYEKLKEKCRRSDSDEE 257
           D  + +  KLK      L S+ E IKQ L +KN+E +KLK     ++S+ E
Sbjct: 782 DGNNSVLEKLKQAW-DELNSESENIKQALDVKNSEVDKLKHALDENNSEIE 831


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,200,160
Number of Sequences: 37544
Number of extensions: 340678
Number of successful extensions: 1055
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)