Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0354.Seq
(911 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 34 0.18
SB_14710| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.56
SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.98
SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4) 31 1.7
SB_16304| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_29917| Best HMM Match : Chlorovi_GP_rpt (HMM E-Value=2.6) 30 3.0
SB_53470| Best HMM Match : E-MAP-115 (HMM E-Value=7.6) 29 3.9
SB_27931| Best HMM Match : Filament (HMM E-Value=0.028) 29 5.2
SB_2462| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.9
SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013) 29 6.9
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.9
SB_34392| Best HMM Match : Ank (HMM E-Value=5.2e-12) 29 6.9
SB_31962| Best HMM Match : DUF1168 (HMM E-Value=1.5) 29 6.9
SB_23558| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.9
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09) 29 6.9
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_23887| Best HMM Match : Pre-SET (HMM E-Value=0.05) 28 9.1
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 33.9 bits (74), Expect = 0.18
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = -2
Query: 457 EDPESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCR 278
E+ E + SDED+ D + E E N + + EK K+E K E EK KEK R
Sbjct: 599 EEKEESSHSDEDTSRDRNREKE------NDREREKEREKEKEKEERDKEREKEKEKEKER 652
Query: 277 RSDSDEE 257
+ + E
Sbjct: 653 EKEKERE 659
>SB_14710| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 32.3 bits (70), Expect = 0.56
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -2
Query: 424 DSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNE 305
D + D + ++PG +K VQ + SD++K+ + +KN E
Sbjct: 118 DYNPNQDCKDQIPGVVKKVQAVWITSDIQKLHPKFMKNKE 157
>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 31.5 bits (68), Expect = 0.98
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = -2
Query: 460 PE-DPESPAKSDEDSGLDSDTESELPGKLKNV--QVSSLLSDMEKIKQELIKNNEYEKLK 290
PE +PE SDE++ + +D+E+E KL + Q+ S+ + K+ E + + +K
Sbjct: 438 PEVEPEQQESSDEETSVSNDSEAERAEKLSQLQQQLISVHEQLSKLTGESVLVTKTKKKP 497
Query: 289 EK 284
EK
Sbjct: 498 EK 499
>SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)
Length = 323
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = -2
Query: 457 EDPESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCR 278
++ + +SDE + D ES+ + S ++ +K E K+NE +K E +
Sbjct: 87 DESDESNESDESNESDKSNESDESNESDESNESDESNESDK-SNESDKSNESDKSNESDK 145
Query: 277 RSDSDE 260
R++SDE
Sbjct: 146 RNESDE 151
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -2
Query: 448 ESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCRRSD 269
E + +++ G + D E E+ + + S SD E ++NE +K E ++
Sbjct: 53 EEEEEEEKEEGKEEDGEEEVVTDERGISSSKDESDESDESNESDESNESDKSNESDESNE 112
Query: 268 SDE 260
SDE
Sbjct: 113 SDE 115
>SB_16304| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1489
Score = 30.3 bits (65), Expect = 2.3
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = -2
Query: 430 DEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCR 278
DED+G D+D E K ++ +L++ ++ KQ+L+K + E +++ R
Sbjct: 340 DEDTGEDNDDEVLAELKRHQSELKTLIAKNKQAKQDLLKLAQEEMRRQELR 390
>SB_29917| Best HMM Match : Chlorovi_GP_rpt (HMM E-Value=2.6)
Length = 360
Score = 29.9 bits (64), Expect = 3.0
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -2
Query: 424 DSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKN 311
D ++ D + ++P K +V+SLLS + +QE ++N
Sbjct: 227 DQSMNYDVKFDVPAKYLGTEVTSLLSKLSPAEQEKLQN 264
>SB_53470| Best HMM Match : E-MAP-115 (HMM E-Value=7.6)
Length = 192
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = -2
Query: 430 DEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCRRSDSDEE 257
+E G + +E +PGK + + +D ++ + + +NNE+E ++ R+D DE+
Sbjct: 5 EEAEGNSTPSEKRVPGKEEEDRHDEERNDEDEDRHDEERNNEHEDRHDE-ERNDEDED 61
>SB_27931| Best HMM Match : Filament (HMM E-Value=0.028)
Length = 428
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 421 SGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNE 305
SGL E E+P + ++ +L + + KQEL NNE
Sbjct: 114 SGLRKSKEIEIPKDTYDREIKALEKKLSRCKQELENNNE 152
>SB_2462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 571
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +1
Query: 400 RCRCLGRCPRPIWPATRDPRDPRIRCGRCFHQNCQVSAEP 519
RC C C R D CG C Q+C SA P
Sbjct: 526 RCNCKTGCSSRKCSCKRHDLDCTAACGTCRRQSCDNSAPP 565
>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 28.7 bits (61), Expect = 6.9
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -2
Query: 460 PEDPESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNE 305
PE E KSDED+ + E E L++ ++ L E +KQEL+ E
Sbjct: 1090 PEREEHDKKSDEDTDSLNPFEDEFESTLESERM-GLQDTTEYVKQELVALEE 1140
>SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
Length = 663
Score = 28.7 bits (61), Expect = 6.9
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = -2
Query: 415 LDSDTESELPGKLKNVQ--VSSLLSDME-KIKQELIKNNEYEKLKEK 284
+D + E +L GKLK++Q ++ D+E K K L + EY KLKE+
Sbjct: 5 VDQEIE-KLRGKLKSIQAELNKTQQDLEEKDKDFLSQTKEYSKLKEE 50
>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1994
Score = 28.7 bits (61), Expect = 6.9
Identities = 22/85 (25%), Positives = 36/85 (42%)
Frame = -2
Query: 559 FARNARRQRTESLQARQKPXXXXXXXXXXXXXDPEDPESPAKSDEDSGLDSDTESELPGK 380
FA+N RR+ +S + P + + K EDSG SD ES++ +
Sbjct: 1637 FAKNQRRKGRKSRKVGSIPADDEGIELKSYKPINREED---KETEDSGEASDAESDISME 1693
Query: 379 LKNVQVSSLLSDMEKIKQELIKNNE 305
++ SLL D + + KN +
Sbjct: 1694 ETRRRMHSLLEDAFSLLEPYKKNQQ 1718
>SB_34392| Best HMM Match : Ank (HMM E-Value=5.2e-12)
Length = 382
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = -2
Query: 433 SDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIK 314
+D+ + +S SEL +++++ +S S+ IKQ+++K
Sbjct: 123 TDDSTDAESTQSSELSSEIRSLNTTSTESENRPIKQQIVK 162
>SB_31962| Best HMM Match : DUF1168 (HMM E-Value=1.5)
Length = 205
Score = 28.7 bits (61), Expect = 6.9
Identities = 18/98 (18%), Positives = 39/98 (39%)
Frame = -2
Query: 553 RNARRQRTESLQARQKPXXXXXXXXXXXXXDPEDPESPAKSDEDSGLDSDTESELPGKLK 374
RN RR+R + + ++ E+ E + +E+ + + E E +
Sbjct: 61 RNKRRRRKNNTEEEEEQTEEEEEQTEEEEEQTEEEEEQTEEEEEQTEEEEEEEEKEEGKE 120
Query: 373 NVQVSSLLSDMEKIKQELIKNNEYEKLKEKCRRSDSDE 260
+++D I ++NE ++ E ++SDE
Sbjct: 121 EDGEEEVVTDERGISSSKDESNESDESNESDESNESDE 158
>SB_23558| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 28.7 bits (61), Expect = 6.9
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -2
Query: 436 KSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCRRSDSD 263
KSD + DSD+E++ G ++ +SS SD E + +E KL+ S+ D
Sbjct: 301 KSDTEKDADSDSENDGSGTSESEYLSSEESD-EDVNEEFDLEKYIRKLERGTSSSEDD 357
>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
Length = 1998
Score = 28.7 bits (61), Expect = 6.9
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = -2
Query: 454 DPESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDME---KIKQELIKNNEYEKLK 290
D S A +D+D G+ +E++L G+ + + L+ D+E ++Q+ +++ E E LK
Sbjct: 151 DENSTAGNDQDEGVAPLSEAKLEGQGTSSIDTKLIRDLEFRASMQQDDLESKELEALK 208
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -2
Query: 448 ESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCRRSD 269
+S KSDED G S+ + K ++ +K ++ +N + ++ KE+ + D
Sbjct: 298 DSVTKSDEDEGRSSERREKEEKKSRDKDKDRERERKDKKDRDRGRNKDRDRDKERDKDRD 357
Query: 268 SDEE 257
D+E
Sbjct: 358 RDKE 361
>SB_23887| Best HMM Match : Pre-SET (HMM E-Value=0.05)
Length = 922
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +1
Query: 400 RCRCLGRCPRPIWPATRDPRDPRIRCGRCFHQNCQVSAEP 519
RC C C R D CG C Q+C SA P
Sbjct: 877 RCNCKTGCSSRKCSCKRHDLDCTAACGTCRGQSCDNSAPP 916
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 28.3 bits (60), Expect = 9.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -2
Query: 340 EKIKQELIKNNEYEKLKEKCRRSDSDEE 257
E +K+ KNNE E+++EK R+++ + E
Sbjct: 1935 EMVKKNEEKNNEIEEMREKMRKANEEIE 1962
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,152,936
Number of Sequences: 59808
Number of extensions: 403845
Number of successful extensions: 1450
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -