Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0354.Seq
(911 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80448-4|AAB37818.1| 293|Caenorhabditis elegans Hypothetical pr... 32 0.65
U97016-8|AAB52350.2| 779|Caenorhabditis elegans Hypothetical pr... 31 1.1
AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical... 29 3.5
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 6.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 6.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 6.1
AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily a... 29 6.1
Z79755-7|CAB02103.1| 466|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 28 8.1
AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical ... 28 8.1
>U80448-4|AAB37818.1| 293|Caenorhabditis elegans Hypothetical
protein F59A3.6 protein.
Length = 293
Score = 31.9 bits (69), Expect = 0.65
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = -2
Query: 418 GLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCRRS 272
GL+ DT L GKLKNV + ++ + Q+L N EYE K + + S
Sbjct: 114 GLEEDTRVRLMGKLKNVAGNKMI--LIYYLQKLADNKEYEIFKLETQAS 160
>U97016-8|AAB52350.2| 779|Caenorhabditis elegans Hypothetical
protein B0261.1 protein.
Length = 779
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = -2
Query: 391 LPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEK 284
L G L+ V++S L+++ME+ QE EYEK +EK
Sbjct: 322 LDGNLE-VRISKLMTEMEEEAQEKKAKGEYEKAEEK 356
>AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical
protein Y110A7A.8 protein.
Length = 504
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -2
Query: 448 ESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCRRSD 269
E A D+D D + +L LK V+ L D+E+ +E + +Y + + + +
Sbjct: 6 ELMADFDDDDDEDLEDIPDLGENLKGVKKEELDDDIEEATEEPMDTTKYASVHDVAKLAR 65
Query: 268 SDE 260
SDE
Sbjct: 66 SDE 68
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = -2
Query: 430 DEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCRRS 272
D++ D E EL KL +VQV++ + I++ + E+ KLK+K ++S
Sbjct: 9022 DQEESFDFAGEEEL--KLDDVQVNNEVVTEITIEESEVTIEEHRKLKKKSKKS 9072
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = -2
Query: 430 DEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCRRS 272
D++ D E EL KL +VQV++ + I++ + E+ KLK+K ++S
Sbjct: 9042 DQEESFDFAGEEEL--KLDDVQVNNEVVTEITIEESEVTIEEHRKLKKKSKKS 9092
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = -2
Query: 430 DEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCRRS 272
D++ D E EL KL +VQV++ + I++ + E+ KLK+K ++S
Sbjct: 9042 DQEESFDFAGEEEL--KLDDVQVNNEVVTEITIEESEVTIEEHRKLKKKSKKS 9092
>AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily
assigned gene nameprotein 63 protein.
Length = 604
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -2
Query: 439 AKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCRRSDSDE 260
A+ ++ L SDTES + +L+ +K+K+ N E+ + K K R
Sbjct: 55 ARLEQSEALTSDTESNEAARRSREPARNLVEGFQKVKERYRFNIEHIEEKYKAREESGCP 114
Query: 259 E 257
E
Sbjct: 115 E 115
>Z79755-7|CAB02103.1| 466|Caenorhabditis elegans Hypothetical
protein F43G9.10 protein.
Length = 466
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -2
Query: 457 EDPESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQ-ELIKNNEYEKLKEKC 281
E+ E + +EDS D D L + L + EK K+ E++K E EK E+
Sbjct: 202 EEEEEESSEEEDSDEDDDPVPRLKPIFTRKKDRITLQEAEKEKEKEILKKIEDEKRAEER 261
Query: 280 RRSDS 266
+R +
Sbjct: 262 KRESA 266
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -2
Query: 394 ELPGKLKNVQVSSLLSDMEKIKQELI-KNNEYEKLKEKCRRS 272
+ PGKLK+ SLL +K K L+ + + Y KL E+C +S
Sbjct: 680 DAPGKLKSKNDRSLLGT-DKEKNALVPQEDSYTKLGEQCVKS 720
>AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical
protein Y53G8AL.1 protein.
Length = 704
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = -2
Query: 457 EDPESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNE 305
E E+P + + + D+ L ++N + S +L D+E+ + L +N+E
Sbjct: 296 ETTENPEIPEISTPREEDSAENLENLVENSEKSEILEDLEENSKNLTENSE 346
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,332,472
Number of Sequences: 27780
Number of extensions: 286447
Number of successful extensions: 1040
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -