Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0354.Seq
(911 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 33 0.26
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 33 0.35
At3g09890.1 68416.m01179 ankyrin repeat family protein contains ... 32 0.61
At2g30350.2 68415.m03694 endo/excinuclease amino terminal domain... 31 1.4
At2g30350.1 68415.m03693 endo/excinuclease amino terminal domain... 31 1.4
At4g27860.1 68417.m04000 integral membrane family protein contai... 29 3.2
At2g03230.1 68415.m00276 hypothetical protein 29 5.7
At4g02760.1 68417.m00376 F-box family protein contains Pfam PF00... 28 7.5
At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine deacet... 28 7.5
At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine deacet... 28 7.5
At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine deacet... 28 7.5
At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine deacet... 28 7.5
At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine deacet... 28 7.5
At5g17910.1 68418.m02100 expressed protein 28 9.9
At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical... 28 9.9
At5g02940.1 68418.m00237 expressed protein 28 9.9
At1g55460.1 68414.m06343 Kin17 DNA-binding protein-related conta... 28 9.9
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 33.1 bits (72), Expect = 0.26
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 445 SPAKSDEDSGLDSDTESELPGKLKNVQVSSL-LSDMEKIKQELIKNNEYEKLKEKCR 278
S KSD+D LD D E E ++K + L L D KI+ E + N Y ++K+ R
Sbjct: 314 SEPKSDDDPSLDEDDE-EFMKRVKKTKAEKLSLVDHSKIEYEPFRKNFYIEVKDISR 369
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 32.7 bits (71), Expect = 0.35
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -2
Query: 445 SPAKSDEDSGLDSDTESELPGKLKNVQVSSL-LSDMEKIKQELIKNNEYEKLKEKCRRSD 269
S K+D+D LD D E E ++K + L L D KI+ E + N Y ++K+ R +
Sbjct: 447 SEPKNDDDPSLDEDDE-EFMKRVKKTKAEKLSLVDHSKIEYEPFRKNFYIEVKDISRMTQ 505
Query: 268 SD 263
+
Sbjct: 506 EE 507
>At3g09890.1 68416.m01179 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 206
Score = 31.9 bits (69), Expect = 0.61
Identities = 17/64 (26%), Positives = 35/64 (54%)
Frame = -2
Query: 457 EDPESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCR 278
ED + E++G+D DT+SELP L+++ ++ D+ ++ + +N ++ E
Sbjct: 14 EDVDGENAIFEENGVDYDTDSELPSHLRDLAAAAQAGDVAALRTAI--DNLNGRVDEPLE 71
Query: 277 RSDS 266
+DS
Sbjct: 72 DNDS 75
>At2g30350.2 68415.m03694 endo/excinuclease amino terminal
domain-containing protein contains Pfam domain PF01541:
Endo/excinuclease amino terminal domain
Length = 368
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = -2
Query: 460 PEDPESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKC 281
PED ESP ++ED D D S L + SS EK K+ + +E ++L
Sbjct: 186 PEDEESPEVNEEDDDDDDDDSSNLSQPGNSNTSSSDDRHFEKAKEPVTVFDEEDRLANFS 245
Query: 280 RRSDSDEE*T 251
DEE T
Sbjct: 246 GFGLLDEEET 255
>At2g30350.1 68415.m03693 endo/excinuclease amino terminal
domain-containing protein contains Pfam domain PF01541:
Endo/excinuclease amino terminal domain
Length = 334
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = -2
Query: 460 PEDPESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKC 281
PED ESP ++ED D D S L + SS EK K+ + +E ++L
Sbjct: 152 PEDEESPEVNEEDDDDDDDDSSNLSQPGNSNTSSSDDRHFEKAKEPVTVFDEEDRLANFS 211
Query: 280 RRSDSDEE*T 251
DEE T
Sbjct: 212 GFGLLDEEET 221
>At4g27860.1 68417.m04000 integral membrane family protein contains
Pfam PF01988: Integral membrane protein
Length = 611
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 430 DEDSGLDSDTESELPGKLKNVQVSSLLSD 344
D D +DSDTE+ K KN +V S SD
Sbjct: 130 DHDKAVDSDTENGSKSKDKNTKVPSWFSD 158
>At2g03230.1 68415.m00276 hypothetical protein
Length = 152
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = -2
Query: 457 EDPESPAKSDED----SGLDSDTESELPGKLKNVQVSSLLSDMEKIKQE 323
E+ ES KS D G DS SE P K K V LS+ K K+E
Sbjct: 9 ENSESKPKSGNDPLDHEGGDSSAASEDPNKSKTVSSDDDLSETNKEKEE 57
>At4g02760.1 68417.m00376 F-box family protein contains Pfam
PF00646: F-box domain; similar to leucine-rich repeats
containing F-box protein FBL3 (GI:5919219) [Homo
sapiens]
Length = 419
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 106 FDERTCLE*TLQIRFLKHKSTRACVR 183
FD+ L+ TLQ+ L +KST+ C+R
Sbjct: 81 FDQDRFLDRTLQLASLLYKSTKRCIR 106
>At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine
deacetylase family protein contains Pfam domain PF03331:
UDP-3-O-acyl N-acetylglycosamine deacetylase
Length = 955
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 757 GRVISXGKRLAAARGHSIQGGPEMNAARRSLEYCIRFIPA 638
G V GK L + + +++ PE+ A R E+ RFIPA
Sbjct: 282 GSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRFIPA 321
>At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain;
Length = 925
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 757 GRVISXGKRLAAARGHSIQGGPEMNAARRSLEYCIRFIPA 638
G V GK L + + +++ PE+ A R E+ RFIPA
Sbjct: 282 GSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRFIPA 321
>At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine
deacetylase family protein contains Pfam domain PF03331:
UDP-3-O-acyl N-acetylglycosamine deacetylase
Length = 949
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 757 GRVISXGKRLAAARGHSIQGGPEMNAARRSLEYCIRFIPA 638
G V GK L + + +++ PE+ A R E+ RFIPA
Sbjct: 282 GSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRFIPA 321
>At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
Length = 905
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 757 GRVISXGKRLAAARGHSIQGGPEMNAARRSLEYCIRFIPA 638
G V GK L + + +++ PE+ A R E+ RFIPA
Sbjct: 282 GSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRFIPA 321
>At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
Length = 925
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 757 GRVISXGKRLAAARGHSIQGGPEMNAARRSLEYCIRFIPA 638
G V GK L + + +++ PE+ A R E+ RFIPA
Sbjct: 282 GSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRFIPA 321
>At5g17910.1 68418.m02100 expressed protein
Length = 1342
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = -2
Query: 448 ESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCRRSD 269
E P +S D G++SD +SE G+ + + D E+ ++E + + EK ++K S
Sbjct: 297 EGPHRSSSDEGMESDGDSESHGE----EGDNENEDEEEDEEEEDEEEKQEKKEDKDDESK 352
Query: 268 S 266
S
Sbjct: 353 S 353
>At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical to
EIN2 [Arabidopsis thaliana] gi|5231113|gb|AAD41076;
member of the natural resistance-associated macrophage
protein (NRAMP) metal transporter family, PMID:11500563;
metal transport capacity has not been shown,
PMID:11500563, PMID:1038174
Length = 1294
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -2
Query: 451 PESPAKSDEDSGLDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEK 284
PE+ +D++ E EL K QVSSL D + +Q ++++ ++ +K
Sbjct: 528 PENILMTDQEIRSSPPEERELDVKYSTSQVSSLKEDSDVKEQSVLQSTVVNEVSDK 583
>At5g02940.1 68418.m00237 expressed protein
Length = 813
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = -2
Query: 400 ESELPGKLKNVQVSSLLS---DMEKIKQELI-KNNEYEKLKEKCR 278
+S GK+KN+QVS + D + +K+ ++ N+YEK +E R
Sbjct: 595 QSIATGKIKNIQVSHSVGNHMDYDTLKESIMHMQNKYEKGEEDIR 639
>At1g55460.1 68414.m06343 Kin17 DNA-binding protein-related contains
similarity to zinc finger protein rts2 GB:U16133
GI:563244 from [Saccharomyces cerevisiae]
Length = 411
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -2
Query: 415 LDSDTESELPGKLKNVQVSSLLSDMEKIKQELIKNNEYEKLKEKCRRSDSDEE 257
+D D+E+ +LKN +V S L++ EK ++E+ + E+ EK + E
Sbjct: 142 IDRDSETLFKERLKNKRVKSDLAEEEKQEREI--QRQIERAAEKLNGGGGEGE 192
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,357,513
Number of Sequences: 28952
Number of extensions: 264965
Number of successful extensions: 945
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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