Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0349.Seq
         (444 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VZS3 Cluster: Protein translation factor SUI1 homolog...    59   5e-08
UniRef50_O60739 Cluster: Eukaryotic translation initiation facto...    48   9e-05
UniRef50_P41567 Cluster: Eukaryotic translation initiation facto...    46   3e-04
UniRef50_UPI0000DD7914 Cluster: PREDICTED: similar to suppressor...    39   0.042
UniRef50_Q94JV4 Cluster: Protein translation factor SUI1 homolog...    39   0.042
UniRef50_Q7XN79 Cluster: OSJNBa0089N06.3 protein; n=6; Oryza sat...    35   0.69 
UniRef50_Q00RG6 Cluster: H0303G06.6 protein; n=2; Oryza sativa|R...    35   0.69 
UniRef50_Q54CC3 Cluster: Putative uncharacterized protein; n=1; ...    33   2.1  
UniRef50_O74516 Cluster: Putative methyltransferase UPF0383; n=1...    32   6.4  
UniRef50_Q4SP28 Cluster: Chromosome 15 SCAF14542, whole genome s...    31   8.5  

>UniRef50_Q9VZS3 Cluster: Protein translation factor SUI1 homolog;
           n=11; Bilateria|Rep: Protein translation factor SUI1
           homolog - Drosophila melanogaster (Fruit fly)
          Length = 110

 Score = 58.8 bits (136), Expect = 5e-08
 Identities = 24/27 (88%), Positives = 25/27 (92%)
 Frame = +2

Query: 2   GDQRENICQWLTKSGLVKPEQLKVHGF 82
           GDQRENICQWLTK GL KP+QLKVHGF
Sbjct: 84  GDQRENICQWLTKVGLAKPDQLKVHGF 110


>UniRef50_O60739 Cluster: Eukaryotic translation initiation factor
           1b; n=44; Fungi/Metazoa group|Rep: Eukaryotic
           translation initiation factor 1b - Homo sapiens (Human)
          Length = 113

 Score = 48.0 bits (109), Expect = 9e-05
 Identities = 20/27 (74%), Positives = 24/27 (88%)
 Frame = +2

Query: 2   GDQRENICQWLTKSGLVKPEQLKVHGF 82
           GDQR+NICQ+L + G+VK EQLKVHGF
Sbjct: 87  GDQRKNICQFLLEVGIVKEEQLKVHGF 113


>UniRef50_P41567 Cluster: Eukaryotic translation initiation factor
           1; n=53; Eukaryota|Rep: Eukaryotic translation
           initiation factor 1 - Homo sapiens (Human)
          Length = 113

 Score = 46.4 bits (105), Expect = 3e-04
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +2

Query: 2   GDQRENICQWLTKSGLVKPEQLKVHGF 82
           GDQR+NICQ+L + GL K +QLKVHGF
Sbjct: 87  GDQRKNICQFLVEIGLAKDDQLKVHGF 113


>UniRef50_UPI0000DD7914 Cluster: PREDICTED: similar to suppressor of
           initiator codon mutations, related sequence 1; n=1; Homo
           sapiens|Rep: PREDICTED: similar to suppressor of
           initiator codon mutations, related sequence 1 - Homo
           sapiens
          Length = 288

 Score = 39.1 bits (87), Expect = 0.042
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = +2

Query: 2   GDQRENICQWLTKSGLVKPEQLKVHGF 82
           GDQ  NICQ+L + GL K +QLKVH F
Sbjct: 262 GDQCNNICQFLVELGLAKDDQLKVHVF 288


>UniRef50_Q94JV4 Cluster: Protein translation factor SUI1 homolog 2;
           n=42; Eukaryota|Rep: Protein translation factor SUI1
           homolog 2 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 113

 Score = 39.1 bits (87), Expect = 0.042
 Identities = 14/27 (51%), Positives = 22/27 (81%)
 Frame = +2

Query: 2   GDQRENICQWLTKSGLVKPEQLKVHGF 82
           GDQR+N+  +L ++GLVK + +K+HGF
Sbjct: 87  GDQRKNVSTFLVQAGLVKKDNIKIHGF 113


>UniRef50_Q7XN79 Cluster: OSJNBa0089N06.3 protein; n=6; Oryza
           sativa|Rep: OSJNBa0089N06.3 protein - Oryza sativa
           (Rice)
          Length = 580

 Score = 35.1 bits (77), Expect = 0.69
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +2

Query: 2   GDQRENICQWLTKSGLVKPEQLKVHGF 82
           GD R ++  +L K+G+V+ + +KVHGF
Sbjct: 554 GDHRNSVSDFLAKAGMVRKDNIKVHGF 580


>UniRef50_Q00RG6 Cluster: H0303G06.6 protein; n=2; Oryza sativa|Rep:
           H0303G06.6 protein - Oryza sativa (Rice)
          Length = 241

 Score = 35.1 bits (77), Expect = 0.69
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +2

Query: 2   GDQRENICQWLTKSGLVKPEQLKVHGF 82
           GD R ++  +L K+G+V+ + +KVHGF
Sbjct: 215 GDHRNSVSDFLAKAGMVRKDNIKVHGF 241


>UniRef50_Q54CC3 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 702

 Score = 33.5 bits (73), Expect = 2.1
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +2

Query: 314 QSNEIVNIPNSLFLFLYDIVFLNCCNNSI 400
           QSN++ +IPNS+ L   +++ +NC NN +
Sbjct: 503 QSNQLTSIPNSIGLNCVNLISINCSNNQL 531


>UniRef50_O74516 Cluster: Putative methyltransferase UPF0383; n=1;
           Schizosaccharomyces pombe|Rep: Putative
           methyltransferase UPF0383 - Schizosaccharomyces pombe
           (Fission yeast)
          Length = 502

 Score = 31.9 bits (69), Expect = 6.4
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 162 IKNMYLESTDVYREKRTRLSAPCALRLPLLYKYCKSYILSPPSRLISCKIINRTK 326
           ++ +YL   D  RE  +RL     + L +L+K+CK  +     R++   ++ R K
Sbjct: 169 VEVLYLVEKDFQRELSSRLLRTAHMLLLVLHKHCKGAVEGYQKRMLHDTVVERNK 223


>UniRef50_Q4SP28 Cluster: Chromosome 15 SCAF14542, whole genome
           shotgun sequence; n=8; Clupeocephala|Rep: Chromosome 15
           SCAF14542, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 227

 Score = 31.5 bits (68), Expect = 8.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 317 SNEIVNIPNSLFLFLYDIVFLNCCNNSINK 406
           +N IV +P     +L D+V+L+C NNS+ +
Sbjct: 71  NNRIVELPPLALNYLSDLVYLDCSNNSLTE 100


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 403,658,127
Number of Sequences: 1657284
Number of extensions: 7247673
Number of successful extensions: 15513
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15505
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22761518346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)