Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0349.Seq
         (444 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   1.7  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   2.3  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    21   6.9  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    21   6.9  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    21   6.9  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    20   9.2  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    20   9.2  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 141 RVVIINPIKNMYLESTDVYR 200
           R ++  PI N Y E+  VYR
Sbjct: 767 RGILFVPIPNKYYEAKQVYR 786


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 323 EIVNIPNSLFLFLYDIVFLNCCNNSIN 403
           + V I NSLF +   +V  +CC  +++
Sbjct: 232 DTVEIFNSLFGYQIILVIFDCCLETVS 258


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 152 NYNAQSLIIQC*VWTCYVLA 93
           NY +   I    VW C VLA
Sbjct: 2   NYRSSKSISTQAVWVCMVLA 21


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 152 NYNAQSLIIQC*VWTCYVLA 93
           NY +   I    VW C VLA
Sbjct: 2   NYRSSKSISTQAVWVCMVLA 21


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 152 NYNAQSLIIQC*VWTCYVLA 93
           NY +   I    VW C VLA
Sbjct: 2   NYRSSKSISTQAVWVCMVLA 21


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 123 LYYERLRVVIINPIKNMYLESTDV 194
           LYY    V++I+    ++LE  +V
Sbjct: 219 LYYLYFDVIVISTFLQLFLEHYEV 242


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 123 LYYERLRVVIINPIKNMYLESTDV 194
           LYY    V++I+    ++LE  +V
Sbjct: 145 LYYLYFDVIVISTFLQLFLEHYEV 168


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,413
Number of Sequences: 336
Number of extensions: 2031
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9985735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)