Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0349.Seq
(444 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 32 0.046
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 30 0.18
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 30 0.18
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 30 0.18
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 30 0.18
SPBC23G7.05 |sui1|psu1|translation initiation factor eIF1|Schizo... 27 0.98
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 27 1.7
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 26 3.0
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 5.2
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 25 5.2
SPCC188.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 5.2
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 31.9 bits (69), Expect = 0.046
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 162 IKNMYLESTDVYREKRTRLSAPCALRLPLLYKYCKSYILSPPSRLISCKIINRTK 326
++ +YL D RE +RL + L +L+K+CK + R++ ++ R K
Sbjct: 169 VEVLYLVEKDFQRELSSRLLRTAHMLLLVLHKHCKGAVEGYQKRMLHDTVVERNK 223
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 29.9 bits (64), Expect = 0.18
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 314 QSNEIVNIPNSLFLFLYDIVFLNCCN 391
Q E +++PN+LFL Y + F +C N
Sbjct: 75 QKEEFIDVPNTLFLGCYTMGFQSCIN 100
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 29.9 bits (64), Expect = 0.18
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 314 QSNEIVNIPNSLFLFLYDIVFLNCCN 391
Q E +++PN+LFL Y + F +C N
Sbjct: 75 QKEEFIDVPNTLFLGCYTMGFQSCIN 100
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 29.9 bits (64), Expect = 0.18
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 314 QSNEIVNIPNSLFLFLYDIVFLNCCN 391
Q E +++PN+LFL Y + F +C N
Sbjct: 75 QKEEFIDVPNTLFLGCYTMGFQSCIN 100
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 29.9 bits (64), Expect = 0.18
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 314 QSNEIVNIPNSLFLFLYDIVFLNCCN 391
Q E +++PN+LFL Y + F +C N
Sbjct: 75 QKEEFIDVPNTLFLGCYTMGFQSCIN 100
>SPBC23G7.05 |sui1|psu1|translation initiation factor
eIF1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 109
Score = 27.5 bits (58), Expect = 0.98
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 2 GDQRENICQWLTKSGLVKPEQLKVHGF 82
GDQR + ++LT+ ++ + +K+HGF
Sbjct: 83 GDQRIKVMEFLTQQLGLQKKNIKIHGF 109
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 1.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 338 PNSLFLFLYDIVFLNCCNNSINK*HVFV 421
PN+L LF + L CN+SI +FV
Sbjct: 182 PNALLLFFPSYLILRKCNSSIKFRQIFV 209
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.8 bits (54), Expect = 3.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 434 FFFFLQKHVIY*LNYYSNLKIQCRIKTKTSY*VY 333
FF+ LQ + +Y NY+ LK + K + VY
Sbjct: 821 FFYVLQTNEMYLANYFQALKTEGTSSVKIRHAVY 854
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.0 bits (52), Expect = 5.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 420 TKTCYLLIELLQQFKN-TMSYKNKNKLLGI 334
T CY ++EL+Q+F T S KLL I
Sbjct: 285 TDLCYTIVELMQEFSTITSSPLLDQKLLSI 314
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 112 GHVMF*QGGLETVHLELFRLH*AGFGEP 29
GH M G TV L+L ++H GF +P
Sbjct: 268 GHKMVMSIGGSTVDLDLVQIHPTGFVDP 295
>SPCC188.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 88
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -1
Query: 285 AAIIYKIYNIYTTEEVARHRARTTVFSFLCRRRCSLNTYF 166
A + K+ IY+ ++RH+A LC + TYF
Sbjct: 46 ALVPLKVIGIYSRLAISRHKAIKPFNFSLCLKLIDSKTYF 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,715,867
Number of Sequences: 5004
Number of extensions: 31585
Number of successful extensions: 77
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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