Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0349.Seq
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803...    40   9e-04
05_05_0359 + 24393254-24393260,24393952-24394163,24394243-243942...    37   0.006
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949...    35   0.026
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904...    27   9.0  
10_08_0201 + 15746790-15746889,15748726-15748863,15750715-157507...    27   9.0  
05_04_0103 - 18017826-18018182,18018268-18018342,18018581-180186...    27   9.0  
04_04_1325 + 32666302-32667633                                         27   9.0  

>07_03_0685 -
           20679883-20679927,20680034-20680087,20680179-20680390,
           20680476-20680550,20683094-20683168,20686196-20686264,
           20686349-20686502,20686577-20686654,20689102-20689194,
           20689491-20689640,20690134-20690268,20691009-20691098,
           20691412-20691453,20691796-20692053,20692131-20692207,
           20693126-20693186,20693687-20693905,20694936-20695208,
           20695314-20695505,20695841-20696011
          Length = 840

 Score = 39.9 bits (89), Expect = 9e-04
 Identities = 14/27 (51%), Positives = 22/27 (81%)
 Frame = +2

Query: 2   GDQRENICQWLTKSGLVKPEQLKVHGF 82
           GDQR+N+  +L ++G+VK E +K+HGF
Sbjct: 814 GDQRKNVSNFLVQAGIVKKEHIKIHGF 840


>05_05_0359 +
           24393254-24393260,24393952-24394163,24394243-24394296,
           24394400-24394444
          Length = 105

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = +2

Query: 2   GDQRENICQWLTKSGLVKPEQLKVHGF 82
           GDQR+N+  +L ++G+ K + +K+HGF
Sbjct: 79  GDQRKNVATFLVQAGIAKKDNIKIHGF 105


>04_04_1237 -
           31991817-31992569,31993452-31993550,31994343-31994976,
           31995329-31995585
          Length = 580

 Score = 35.1 bits (77), Expect = 0.026
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +2

Query: 2   GDQRENICQWLTKSGLVKPEQLKVHGF 82
           GD R ++  +L K+G+V+ + +KVHGF
Sbjct: 554 GDHRNSVSDFLAKAGMVRKDNIKVHGF 580


>12_02_0388 -
           18486957-18487016,18487286-18489418,18489985-18490484,
           18490728-18490899
          Length = 954

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 132 ERLRVVIINPIKNMYLESTDVYREKRTRLSAPCALRLPLLY 254
           E+L+ +I +   N  L +TD   ++R  LS PC  R  L+Y
Sbjct: 801 EKLQQIIGSTSNNDNLPNTD--EKERISLSQPCLKRFTLIY 839


>10_08_0201 +
           15746790-15746889,15748726-15748863,15750715-15750792,
           15751251-15752632
          Length = 565

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 282 AIIYKIYNIYTTEEVARHRART 217
           AI+  +Y I T ++ A+HRART
Sbjct: 544 AILQTMYTIKTYQDQAKHRART 565


>05_04_0103 -
           18017826-18018182,18018268-18018342,18018581-18018673,
           18018770-18019013,18019219-18019346
          Length = 298

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 246 LLYKYCKSYILSPPSRLISCKIINRTK 326
           LL+K CK Y+     R++ C ++   K
Sbjct: 174 LLHKLCKVYLFISSQRIVGCLVVEPIK 200


>04_04_1325 + 32666302-32667633
          Length = 443

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -1

Query: 123 MLSVDMLCFSRAA*KPCTLSCSGFTKPDLVSHWQIFS 13
           +L V      RA  KPCT + +   +P++++ W++ +
Sbjct: 80  LLHVQEAAAKRAVIKPCTPTLTPPNEPEVINAWELMA 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,565,507
Number of Sequences: 37544
Number of extensions: 185165
Number of successful extensions: 323
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)