Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0349.Seq
         (444 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.32 
SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12)                 29   2.3  
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)           27   7.0  
SB_50280| Best HMM Match : Marek_A (HMM E-Value=1.7)                   27   9.2  
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)             27   9.2  

>SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 2   GDQRENICQWLTKSGLVKPEQLKVHGF 82
           GDQR +  ++L +  L K +Q+KVHGF
Sbjct: 558 GDQRAHAQEFLLQIDLAKKDQIKVHGF 584


>SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12)
          Length = 446

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 317 SNEIVNIPNSLFLFLYDIVFLNCCNNSI 400
           +N+I  IPN LF+ L D+++L+  +N +
Sbjct: 69  NNKISVIPNQLFINLIDLIYLDLSDNCL 96


>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -1

Query: 399  IELLQQFKNTMSYKNKNKLLGIFTISFD*LFCNL*DETAAIIYKIYNI 256
            +E LQ  K+  S +   K L + T+ F+ LFC    ET A++ + +N+
Sbjct: 1155 LEYLQVSKDCPSTE---KALRMATLQFNSLFCIANQETLAVLAQFFNV 1199


>SB_50280| Best HMM Match : Marek_A (HMM E-Value=1.7)
          Length = 573

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 105 TCPHSTLYYERLRVVIINPIKNMY 176
           TCP   LY+  +++ I++P++ +Y
Sbjct: 456 TCPLEALYFVMVKIRILSPLEALY 479


>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
          Length = 1496

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 8    QRENICQWLTKSGLVKPEQLKVHGF*AALLKHNMSTLNI 124
            QR++  QW    G+V+P QL      A   +  M+ LN+
Sbjct: 1165 QRKDNNQWAIPGGMVEPGQLVTQALKAEFGEEAMAKLNV 1203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,821,695
Number of Sequences: 59808
Number of extensions: 235761
Number of successful extensions: 1942
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1942
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)