Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0349.Seq
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical pr...    31   0.38 
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    29   2.0  
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    29   2.0  
L16621-11|AAA28226.2|  192|Caenorhabditis elegans Hypothetical p...    28   2.7  
AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical ...    27   6.1  

>U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical
           protein T27F7.3b protein.
          Length = 109

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 2   GDQRENICQWLTKSGLVKPEQLKVHGF 82
           GDQR+ +  +L K G+V     +VHGF
Sbjct: 83  GDQRDKVKDFLIKVGIVNESNCRVHGF 109


>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
           homolog protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 308 NNQSNEIVNIPNSLFLFLYDIVFLNCCNNSIN 403
           N   N I  IPNS+   L D++FL+  NN ++
Sbjct: 132 NLSYNNIETIPNSVCANLIDLLFLDLSNNKLD 163


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
           flightless) homologprotein 1 protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 308 NNQSNEIVNIPNSLFLFLYDIVFLNCCNNSIN 403
           N   N I  IPNS+   L D++FL+  NN ++
Sbjct: 132 NLSYNNIETIPNSVCANLIDLLFLDLSNNKLD 163


>L16621-11|AAA28226.2|  192|Caenorhabditis elegans Hypothetical
           protein ZK688.1 protein.
          Length = 192

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 150 IINPIKNMYLESTDVYREKRTRLSAPCALRLPLLYKYCKSYILSPPSRLISCKII 314
           ++NP  +     TD  + +   LS P  + +    + C S  +SPP    SCK +
Sbjct: 84  VVNPPVSPIQPKTDPEQSENDCLSCPSLIPILDSCENCVSVKISPPFEYYSCKAV 138


>AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical
           protein K03H6.2 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 29  WLTKSGLVKPEQLKV 73
           W+ K+GL KPEQ+K+
Sbjct: 214 WVVKTGLFKPEQMKL 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,650,445
Number of Sequences: 27780
Number of extensions: 183082
Number of successful extensions: 377
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)