Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0349.Seq
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.49 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   2.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   2.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   2.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   4.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.49
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 111  PHSTLYYERLRVVIINPIKNMYLESTDVYREKRTRLSAPCALRL 242
            PHSTL Y+     ++ P K    +S D  +E  T  +A  A  +
Sbjct: 1072 PHSTLEYKVKERHLMRPRKRDQKQSDDKTKETSTVTAAAAATNI 1115


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +1

Query: 211 HGCPRPVPCDFLCC-INIVNL 270
           H C   + CD LCC  +I+NL
Sbjct: 107 HLCKLWLTCDVLCCTASILNL 127


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +1

Query: 211 HGCPRPVPCDFLCC-INIVNL 270
           H C   + CD LCC  +I+NL
Sbjct: 107 HLCKLWLTCDVLCCTASILNL 127


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +1

Query: 211 HGCPRPVPCDFLCC-INIVNL 270
           H C   + CD LCC  +I+NL
Sbjct: 107 HLCKLWLTCDVLCCTASILNL 127


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 332 NIPNSLFLFLYDIVFLNCCNNSINK*HVFV 421
           N+ N  F  +  ++ L C +  +NK  VF+
Sbjct: 51  NVINPFFCDMSPLLSLVCADTRLNKLAVFI 80


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 141 RVVIINPIKNMYLESTDVYR 200
           R ++  PI N Y E+  +Y+
Sbjct: 773 RGILFMPIPNRYREAKQIYK 792


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 159  PIKNMYLESTDV 194
            P KN Y E+TD+
Sbjct: 1268 PAKNTYFEATDL 1279


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 159  PIKNMYLESTDV 194
            P KN Y E+TD+
Sbjct: 1264 PAKNTYFEATDL 1275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,961
Number of Sequences: 438
Number of extensions: 2235
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)