Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0349.Seq
         (444 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54760.1 68418.m06820 eukaryotic translation initiation facto...    39   0.001
At4g27130.1 68417.m03899 eukaryotic translation initiation facto...    39   0.001
At1g54290.1 68414.m06189 eukaryotic translation initiation facto...    39   0.001
At5g54940.2 68418.m06843 eukaryotic translation initiation facto...    39   0.002
At5g54940.1 68418.m06842 eukaryotic translation initiation facto...    39   0.002
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ...    31   0.35 
At3g11460.1 68416.m01397 pentatricopeptide (PPR) repeat-containi...    28   2.5  
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ...    27   4.3  
At4g02220.1 68417.m00300 zinc finger (MYND type) family protein ...    27   7.5  
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    26   10.0 

>At5g54760.1 68418.m06820 eukaryotic translation initiation factor
           SUI1, putative similar to SP|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 113

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 14/27 (51%), Positives = 22/27 (81%)
 Frame = +2

Query: 2   GDQRENICQWLTKSGLVKPEQLKVHGF 82
           GDQR+N+  +L ++GLVK + +K+HGF
Sbjct: 87  GDQRKNVSTFLVQAGLVKKDNIKIHGF 113


>At4g27130.1 68417.m03899 eukaryotic translation initiation factor
           SUI1, putative similar to SP|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 113

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 14/27 (51%), Positives = 22/27 (81%)
 Frame = +2

Query: 2   GDQRENICQWLTKSGLVKPEQLKVHGF 82
           GDQR+N+  +L ++GLVK + +K+HGF
Sbjct: 87  GDQRKNVSTFLVQAGLVKKDNIKIHGF 113


>At1g54290.1 68414.m06189 eukaryotic translation initiation factor
           SUI1, putative similar to P|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 113

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 14/27 (51%), Positives = 22/27 (81%)
 Frame = +2

Query: 2   GDQRENICQWLTKSGLVKPEQLKVHGF 82
           GDQR+N+  +L ++GLVK + +K+HGF
Sbjct: 87  GDQRKNVSTFLVQAGLVKKDNIKIHGF 113


>At5g54940.2 68418.m06843 eukaryotic translation initiation factor
           SUI1, putative similar to SP|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 112

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 13/27 (48%), Positives = 22/27 (81%)
 Frame = +2

Query: 2   GDQRENICQWLTKSGLVKPEQLKVHGF 82
           GDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 86  GDQRKKVSQFLVQTGIAKKDQIKIHGF 112


>At5g54940.1 68418.m06842 eukaryotic translation initiation factor
           SUI1, putative similar to SP|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 112

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 13/27 (48%), Positives = 22/27 (81%)
 Frame = +2

Query: 2   GDQRENICQWLTKSGLVKPEQLKVHGF 82
           GDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 86  GDQRKKVSQFLVQTGIAKKDQIKIHGF 112


>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 725

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 276 IYKIYNIYTTEEVARHRARTTVFSFLCRRRCSLNTYF 166
           I+K+   Y   E+AR+   + +F ++CR RC     F
Sbjct: 626 IFKVGLFYKEVEIARNDGNSRLFCYICRLRCGQTLVF 662


>At3g11460.1 68416.m01397 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 623

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 165 KNMYLESTDVYREKRTRLSAPCALRLPLLYKYCKSYILSPPSRLISCKI 311
           ++++ ES  +YR      S+P A   P + K C S  L    + + C +
Sbjct: 31  QSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 79


>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 276 IYKIYNIYTTEEVARHRARTTVFSFLCRRRCSLNTYF 166
           I+K+   Y   E+AR+   + +F + C  RC     F
Sbjct: 586 IFKVGLYYKEVEIARNDGNSRLFCYTCELRCGQTLVF 622


>At4g02220.1 68417.m00300 zinc finger (MYND type) family protein /
           programmed cell death 2 C-terminal domain-containing
           protein similar to SP|Q16342 Programmed cell death
           protein 2 (Zinc finger protein Rp-8) {Homo sapiens};
           contains Pfam profiles PF01753: MYND finger, PF04194:
           Programmed cell death protein 2, C-terminal putative
           domain
          Length = 418

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 312 LFCNL*DETAAIIYKIYNIYTTEEVARHRARTTVFSFLC 196
           + C+L +E    + ++Y   T +E A HR   T+F F+C
Sbjct: 93  ILCDLCEEPMQFVLQLYAPLTDKESAFHR---TLFLFMC 128


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
           binding domain-containing protein contains Pfam profiles
           PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
           binding domain
          Length = 2176

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 129 NTMLSVDMLCFSRAA*KPCTLSCSGFTKPDLVSHWQIFSRW 7
           N +LS+   C S A   PC+++C    K +  +     SRW
Sbjct: 628 NVILSLSKFCCSLA---PCSVTCGEKDKSEFAAVVDALSRW 665


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,703,890
Number of Sequences: 28952
Number of extensions: 155732
Number of successful extensions: 319
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)