Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0346.Seq
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    27   0.15 
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    27   0.15 
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    27   0.15 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.60 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.3  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 283 KLQEESRLNPEPIGLDLSTGEAFKPTDLGILDN 381
           K  +E  + PEPI   LST  +  P+   ++ N
Sbjct: 310 KRMKEGLIPPEPISASLSTSNSNSPSSTNLIQN 342


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 283 KLQEESRLNPEPIGLDLSTGEAFKPTDLGILDN 381
           K  +E  + PEPI   LST  +  P+   ++ N
Sbjct: 99  KRMKEGLIPPEPISASLSTSNSNSPSSTNLIQN 131


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 283 KLQEESRLNPEPIGLDLSTGEAFKPTDLGILDN 381
           K  +E  + PEPI   LST  +  P+   ++ N
Sbjct: 99  KRMKEGLIPPEPISASLSTSNSNSPSSTNLIQN 131


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 11/41 (26%), Positives = 15/41 (36%)
 Frame = +3

Query: 393 ETNIEFLFSDRKQPPPCRRDYESRNEQPQRIIINKCFILGH 515
           E   E     R +PP  R  +     QP   +  KC   G+
Sbjct: 400 EATAELKLGGRFEPPQIRHAFNEETVQPGNSVFLKCIASGN 440


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = +1

Query: 349 FKPTDLGILDNYIVKKQILNSCSVIASNL 435
           F+P +L ++  Y+   ++LN+   +  N+
Sbjct: 243 FRPVELSLMQLYLGHNKLLNATKDLFGNM 271


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,697
Number of Sequences: 336
Number of extensions: 2923
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)