Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0346.Seq
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    94   2e-20
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    57   2e-09
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    48   2e-06
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    44   2e-05
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    40   5e-04
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    37   0.002
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa...    27   2.0  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    27   2.6  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    25   8.0  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    25   8.0  

>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 47/86 (54%), Positives = 60/86 (69%), Gaps = 2/86 (2%)
 Frame = +2

Query: 2   SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELL-KY-KDT 175
           S  I    PN +T+ QI+DA RDGLRA+ NA+ED C+I GA AFE+     L  K+    
Sbjct: 370 SATILIHGPNTYTIQQIQDATRDGLRAVKNAVEDNCLIVGAGAFEVACAAHLRNKFAAKE 429

Query: 176 VKGKARLGIQAYAEALLVIPKTLAVN 253
           VKGKA++G+ AYA+ALL+IPKTLA N
Sbjct: 430 VKGKAKMGVYAYADALLIIPKTLAAN 455



 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 42/74 (56%), Positives = 52/74 (70%)
 Frame = +1

Query: 259 YDAQDTIVKLQEESRLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNLL 438
           YD QD IV LQEE+    + +GLDL TG  F P   GI DNY V + +L+S +VIASNL+
Sbjct: 458 YDTQDAIVALQEEASEGYK-VGLDLKTGMPFDPEVEGIYDNYRVIRHMLHSATVIASNLI 516

Query: 439 LVDEIMRAGMSSLK 480
            VD+I+RAG SSLK
Sbjct: 517 SVDQILRAGRSSLK 530


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 27/84 (32%), Positives = 48/84 (57%)
 Frame = +2

Query: 2   SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
           S  I    PN+++L +++ ++ D L  +   +E   V+PG  A E   +  L  +  ++ 
Sbjct: 377 SASIVLRGPNEYSLDEMERSMHDSLSVVKRTLESGKVVPGGGAVETALSIYLENFATSLG 436

Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
            + +L I  +A+ALL+IP+TLAVN
Sbjct: 437 SREQLAIAEFAQALLIIPRTLAVN 460


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 25/75 (33%), Positives = 45/75 (60%)
 Frame = +2

Query: 29  NKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQA 208
           N  TL + + ++ D L  I   ++ + +I G  + EI+A   LL++   ++G+  + I+A
Sbjct: 382 NLLTLEEAERSLHDALCVIRCLVKQRALIAGGGSPEIEAAQRLLEHARQLEGREAICIRA 441

Query: 209 YAEALLVIPKTLAVN 253
           ++EAL +IP TLA N
Sbjct: 442 FSEALEIIPVTLAEN 456


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 21/84 (25%), Positives = 43/84 (51%)
 Frame = +2

Query: 2   SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
           +C I    P+K  + +++  ++D +    N      + PG  A E+  +  L +   +++
Sbjct: 369 ACTILLRGPSKDIINEVERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIE 428

Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
           G A+   +A A+A+ +IP+TL  N
Sbjct: 429 GVAQWPYRAVADAIEIIPRTLVQN 452


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 20/74 (27%), Positives = 39/74 (52%)
 Frame = +2

Query: 32  KHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQAY 211
           K  L  ++ A+ DG+  +   ++D  +I GA A +++    L+   +   G  +  I+ Y
Sbjct: 382 KTYLDDLERAIDDGVNIVKALVKDNRLIFGAGASDMQLCIRLISVGEKTPGIYQHAIKQY 441

Query: 212 AEALLVIPKTLAVN 253
            EA  V+P+T++ N
Sbjct: 442 GEAFEVVPRTISEN 455


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 21/69 (30%), Positives = 38/69 (55%)
 Frame = +1

Query: 256 GYDAQDTIVKLQEESRLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNL 435
           G+D+ + + +L+       + +GLD+  GE       GIL+   +K+ +++S S  A  L
Sbjct: 451 GFDSSELVAQLKAAHYDGNDTMGLDMDEGEIADMRAKGILEALKLKQAVVSSGSEGAQLL 510

Query: 436 LLVDEIMRA 462
           L VD I++A
Sbjct: 511 LRVDTILKA 519


>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 191

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +1

Query: 373 LDNYIVKKQILNSCSVIASNLLLVDEIMR 459
           + N +  KQ + +  +IASNLLL+D+I++
Sbjct: 118 IQNNLKHKQDVENEKLIASNLLLLDQILK 146


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 225 KRASA*AWIPRRALPLTVSLYFSSSVLALISKAAAP 118
           KRA   +W+   +LPL+V+LY    VL +I K   P
Sbjct: 227 KRAFQESWLSALSLPLSVNLY--KQVLNVIHKRVIP 260


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 432 PPPCRRDYESRNEQPQRIIINKCFILGHSSFCYYFHSFIILLSTVNAFLCK 584
           P P   D +       R I+N+  +  HS+FC    +  + ++ ++ FL +
Sbjct: 153 PNPKYMDQQKELTWKMREILNEWLVEIHSNFCLMPETLYLAVNIIDRFLSR 203


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 301 RLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNLLLVD 447
           RLNP+ I  +L T  +  P    +L + + +   +N+CS   +  LL D
Sbjct: 13  RLNPKDISKNLDTILSVAPDLADVLLSSVDQPLKVNTCSESGNQYLLCD 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,801
Number of Sequences: 5004
Number of extensions: 46734
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)