Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0346.Seq
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 106 2e-23
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 47 1e-05
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 46 4e-05
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 45 5e-05
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 43 2e-04
10_08_0620 - 19321612-19323237 39 0.003
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 39 0.004
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 35 0.073
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 34 0.13
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 31 0.68
05_03_0425 - 13808840-13809414,13809552-13809765,13810268-138113... 31 1.2
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 30 1.6
11_06_0178 + 20942757-20942801,20943790-20943867,20943930-209440... 29 2.7
12_02_0430 + 18995762-18995820,18995900-18996491 28 6.3
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 28 6.3
04_04_0130 + 22969710-22969884,22970019-22970328,22970456-22970996 28 8.4
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 106 bits (254), Expect = 2e-23
Identities = 50/85 (58%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELL-KYKDTV 178
SC I + PN HT+ QIKDAVRDGLR++ N +ED+ V+ GA AFE+ A L+ K TV
Sbjct: 390 SCTILIKGPNDHTIAQIKDAVRDGLRSVKNTVEDEAVVLGAGAFEVAAKKHLIDNVKKTV 449
Query: 179 KGKARLGIQAYAEALLVIPKTLAVN 253
KG+A+LG++A+A+ALLVIPKTLA N
Sbjct: 450 KGRAQLGVEAFADALLVIPKTLAEN 474
Score = 68.9 bits (161), Expect = 4e-12
Identities = 38/75 (50%), Positives = 47/75 (62%)
Frame = +1
Query: 256 GYDAQDTIVKLQEESRLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNL 435
G D QD IV LQ E +GL+ +GE P GI DNY VK+QI+NS +IAS L
Sbjct: 476 GLDTQDVIVSLQNEHDRGLV-VGLNHHSGEPIDPQMEGIFDNYSVKRQIINSGPIIASQL 534
Query: 436 LLVDEIMRAGMSSLK 480
LLVDE++RAG + K
Sbjct: 535 LLVDEVIRAGRNMRK 549
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/75 (32%), Positives = 38/75 (50%)
Frame = +2
Query: 29 NKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQA 208
N L +I ++ D L + +E V+ G A E + L T+ + +L I
Sbjct: 366 NDFMLDEIDRSLHDALCIVKRTLESNMVVAGGGAVEAALSVYLENLATTLGSREQLAIAE 425
Query: 209 YAEALLVIPKTLAVN 253
+AE+LL+IPK L+VN
Sbjct: 426 FAESLLIIPKVLSVN 440
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 45.6 bits (103), Expect = 4e-05
Identities = 18/71 (25%), Positives = 43/71 (60%)
Frame = +2
Query: 41 LTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQAYAEA 220
+ + + ++ D + + A+++ V+PG A +++ + L ++ T+ GK++ + ++A+A
Sbjct: 385 IEEAERSLHDAIMIVRRALKNSTVVPGGGAIDMEISKYLRQHARTIAGKSQFFVNSFAKA 444
Query: 221 LLVIPKTLAVN 253
L VIP+ L N
Sbjct: 445 LEVIPRQLCDN 455
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +2
Query: 41 LTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQAYAEA 220
L ++ AV DG+ + D +IPGAAA EI+ L ++ G + I +AE+
Sbjct: 383 LDDLERAVDDGVNTYKSMCRDSRIIPGAAATEIELARRLKEFSLKETGLDQYAIAKFAES 442
Query: 221 LLVIPKTLAVN 253
++P+TLA N
Sbjct: 443 FEMVPRTLAEN 453
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/84 (25%), Positives = 43/84 (51%)
Frame = +2
Query: 2 SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
+C + +K L +++ ++D + N +++ ++PG A E+ + L + +V+
Sbjct: 373 ACTVLLRGASKDVLNEVERNLQDAMSVARNILKNPKLLPGGGATELTVSAALKQKSSSVE 432
Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
G + +A A A IP+TLA N
Sbjct: 433 GVEKWPYEAAALAFEAIPRTLAQN 456
>10_08_0620 - 19321612-19323237
Length = 541
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/75 (28%), Positives = 39/75 (52%)
Frame = +2
Query: 29 NKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQA 208
N+ + + + ++ D I + + +I G A EI+ + +L + ++G ++
Sbjct: 396 NQMVIDEAQRSLHDAFCVIRCLVNKRFLIAGGGAPEIEMSMQLAAWAKELRGMESYCVRE 455
Query: 209 YAEALLVIPKTLAVN 253
+AEAL VIP TLA N
Sbjct: 456 FAEALEVIPYTLAEN 470
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/84 (23%), Positives = 41/84 (48%)
Frame = +2
Query: 2 SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
+C + +K L +++ ++D + N ++ ++PG A E+ + L + +V+
Sbjct: 373 ACTVLLRGASKDVLNEVERNLQDAMSMARNIWKNPKLLPGGGATELTVSATLKQKSSSVE 432
Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
G + +A A A IP+TL N
Sbjct: 433 GVEKWPYEAAALAFEAIPRTLLQN 456
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 319 IGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNLLLVDEIM 456
+G+D S+G+ + I D+Y VK Q + A LL +D+I+
Sbjct: 480 VGIDGSSGDIVDMKERKIWDSYSVKAQTFKTAIEAACMLLRIDDIV 525
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 34.7 bits (76), Expect = 0.073
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 95 IEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQAYAEALLVIPKTLAVN 253
+ + +I G A EI+ + +L + ++G I+ +AEAL VIP TLA N
Sbjct: 427 VNKRFLIAGGGAPEIEMSMQLAAWAKELQGMESYCIKEFAEALEVIPYTLAEN 479
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/84 (25%), Positives = 38/84 (45%)
Frame = +2
Query: 2 SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
+C I ++H L + + ++ D L ++ + D V+ G E+ E+
Sbjct: 340 ACTIVLRGASEHVLDEAERSLHDALCVLSQTVNDTRVLYGGGWPEMVMAKEVDGLARKTP 399
Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
GK I+A++ AL IP +A N
Sbjct: 400 GKKSHAIEAFSRALQSIPTIIADN 423
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Frame = +1
Query: 256 GYDAQDTIVKLQEESRLNPEPIGLDLSTGEAFK-----------PTDLGILDNYIVKKQI 402
G D+ D I +L+ E G+D+ +G + LGI +++ K+ +
Sbjct: 425 GLDSADLISQLRAEHHKEQSTAGIDVISGGGLELILRLLPQVGDMEKLGISESFKAKQAV 484
Query: 403 LNSCSVIASNLLLVDEIM 456
L S + A +L VDEI+
Sbjct: 485 LMSATEAAEMILRVDEIV 502
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 31.5 bits (68), Expect = 0.68
Identities = 20/84 (23%), Positives = 36/84 (42%)
Frame = +2
Query: 2 SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
+C I ++H L + + ++ D L ++ + D V+ G E+ +
Sbjct: 363 ACTIVLRGASEHVLDEAERSLHDALCVLSQTVNDTRVLFGGGWPEMVMAKAVDDLARKTP 422
Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
GK I A++ AL IP +A N
Sbjct: 423 GKKSHAIDAFSRALQAIPTIIADN 446
>05_03_0425 -
13808840-13809414,13809552-13809765,13810268-13811317,
13811616-13811687,13812075-13812334,13812647-13812731
Length = 751
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = -3
Query: 168 LYFSSSVLALISKAAAPGMT--HLSSMALLIARRPSRTASLICVNVCLL----GASCR 13
L F+ VL L + + +P T H+ + L A RP+ A L+C LL ASCR
Sbjct: 208 LRFAPKVLLLAAPSVSPNATSFHILTSTLCQAHRPTAAADLLCCMPSLLLDPDPASCR 265
>12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = -3
Query: 168 LYFSSSVLALISKAAAPGMT--HLSSMALLIARRPSRTASLICVNVCLL----GASCR 13
L F+ VL L + + +P T H+ + L A RP+ A L+C LL ASCR
Sbjct: 1352 LRFAPKVLLLAAPSVSPDATTFHILTSTLCQAHRPAAAADLLCCMPSLLLDPDPASCR 1409
>11_06_0178 +
20942757-20942801,20943790-20943867,20943930-20944025,
20944114-20944221,20944322-20944420
Length = 141
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 41 LTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKY 166
L + AV DG+ + D +IPGAAA EI+ L ++
Sbjct: 94 LDDLGRAVDDGVNTYKSMCRDSRIIPGAAATEIELAKRLKEF 135
>12_02_0430 + 18995762-18995820,18995900-18996491
Length = 216
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -3
Query: 207 AWIPRRALPLTVSLYFSSSVLALISKAAAPGMTHLSSMALLI 82
+++P + LP S+Y SSS + S +++ T S +ALL+
Sbjct: 11 SFVPLKLLPFLYSMYSSSSSSSSASSSSSSFSTSSSYLALLV 52
>11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = -3
Query: 168 LYFSSSVLALISKAAAPGMT--HLSSMALLIARRPSRTASLICVNVCLL----GASCR 13
L F+ VL L + + +P T H+ L A RP+ A L+C LL ASCR
Sbjct: 1327 LRFAPKVLLLAAPSVSPDATTFHILISTLCQAHRPAAAADLLCCMPSLLLDPDLASCR 1384
>04_04_0130 + 22969710-22969884,22970019-22970328,22970456-22970996
Length = 341
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 322 GLDLSTGEAFKPTDLGILDNYIVKK 396
G+DL G F PTD ++ +Y+ KK
Sbjct: 9 GMDLPPGFRFHPTDEELITHYLAKK 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,384,906
Number of Sequences: 37544
Number of extensions: 287058
Number of successful extensions: 641
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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