Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0346.Seq
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               62   3e-10
SB_37965| Best HMM Match : TIR (HMM E-Value=3.3)                       49   3e-06
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   48   7e-06
SB_36771| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   7e-06
SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_25825| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_22149| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)                   28   8.5  
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 28/52 (53%), Positives = 39/52 (75%)
 Frame = +1

Query: 256 GYDAQDTIVKLQEESRLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNS 411
           G+D Q+T+VKL EE   +  P+G+DLS+GEA  P D G+ DNY VK+Q+L+S
Sbjct: 378 GFDPQETMVKLLEEYADSNTPVGVDLSSGEAMIPADAGVWDNYRVKRQLLHS 429



 Score = 31.1 bits (67), Expect = 0.92
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = +2

Query: 179 KGKARLGIQAYAEALLVIPKTLAVN 253
           KG   +  +A+A+ALLVIPKTLA N
Sbjct: 352 KGFVVINQKAFADALLVIPKTLAQN 376


>SB_37965| Best HMM Match : TIR (HMM E-Value=3.3)
          Length = 189

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/75 (29%), Positives = 42/75 (56%)
 Frame = +2

Query: 29  NKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQA 208
           N + L +++ ++ D +  +   +E K ++PG  A E   +  L  +  ++  + +L I  
Sbjct: 16  NDYMLDEMERSMHDAICVVKRVLESKTLVPGGGAVEAALSIYLENFATSLGSREQLAIAE 75

Query: 209 YAEALLVIPKTLAVN 253
           +A +LLVIPK L+VN
Sbjct: 76  FANSLLVIPKILSVN 90


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 24/69 (34%), Positives = 38/69 (55%)
 Frame = +1

Query: 256 GYDAQDTIVKLQEESRLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNL 435
           GYD+ D + KL+          GL++  G      DLGI ++Y VK+Q+L S +  A  +
Sbjct: 452 GYDSADLVAKLRAAHTQGKNTYGLNMVNGTVGDMRDLGITESYQVKRQVLLSAAEAAEMI 511

Query: 436 LLVDEIMRA 462
           + VD I++A
Sbjct: 512 VRVDNIVKA 520


>SB_36771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 24/69 (34%), Positives = 38/69 (55%)
 Frame = +1

Query: 256 GYDAQDTIVKLQEESRLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNL 435
           GYD+ D + KL+          GL++  G      DLGI ++Y VK+Q+L S +  A  +
Sbjct: 10  GYDSADLVAKLRAAHTQGKNTYGLNMVNGTVGDMRDLGITESYQVKRQVLLSAAEAAEMI 69

Query: 436 LLVDEIMRA 462
           + VD I++A
Sbjct: 70  VRVDNIVKA 78


>SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 25/75 (33%), Positives = 39/75 (52%)
 Frame = +2

Query: 29  NKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQA 208
           NK  L +   ++ D L  I   ++ + +I G  A EI+    L +Y  T+       ++A
Sbjct: 74  NKLVLEEADRSLHDALCVIRCLVKKRALIAGGGAPEIEVALRLAEYSQTLTSMDAYCVRA 133

Query: 209 YAEALLVIPKTLAVN 253
           +AEAL +IP TLA N
Sbjct: 134 FAEALEIIPYTLAEN 148


>SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 24/84 (28%), Positives = 40/84 (47%)
 Frame = +2

Query: 2   SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
           +C I     +K  L +++  ++D +    N I D  ++PG  A E+     L +    V 
Sbjct: 160 ACTILLRGASKDVLNEVERNLQDAMNVARNVIVDPRLVPGGGACEMALAHALTEKAKLVA 219

Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
           G  +   +A A+ L VIP+TL  N
Sbjct: 220 GVQQWPYKAVAKGLEVIPRTLIQN 243


>SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 24/84 (28%), Positives = 40/84 (47%)
 Frame = +2

Query: 2   SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
           +C I     +K  L +++  ++D +    N I D  ++PG  A E+     L +    V 
Sbjct: 217 ACTILLRGASKDVLNEVERNLQDAMNVARNVIVDPRLVPGGGACEMALAHALTEKAKLVA 276

Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
           G  +   +A A+ L VIP+TL  N
Sbjct: 277 GVQQWPYKAVAKGLEVIPRTLIQN 300


>SB_25825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 366 RYFGQLYREETNIEFLFSDRKQPPP-CRRDYESRNEQPQRIIINKCFILGHSS 521
           RY+G  Y + T+++FL   R  P P   +++ES + Q   ++  +C ++ + S
Sbjct: 21  RYYGVCYADSTSLDFL---RAYPKPFAFKEHESHSAQTDNVV--RCIVINNKS 68


>SB_22149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 486 IINKCFILGHSSF-CYYFHSFIILLSTVNAFLCKI 587
           ++N C + G +S  CY + SF I+ S +  + C+I
Sbjct: 135 VVNGCLVRGTASIQCYQYSSFSIIFSYIATWRCQI 169


>SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)
          Length = 1065

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/37 (32%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
 Frame = -3

Query: 201 IPRRALPLTVSLYFSSSVLALISKAA-APGMTHLSSM 94
           IPR+  P T+S+Y++S+  + +S+++ A  ++H S++
Sbjct: 658 IPRQEHPATISVYYASTCSSGLSQSSKAASLSHSSAL 694


>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1758

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = -2

Query: 211  ISLDSKTGLAFNSVLIFQQFRVSFDFEGRSTGYDAFIFNGVINSAEAVT 65
            ++   ++G  + +V++   F +   + G  TGY  FIF   + +  ++T
Sbjct: 1254 VASSGQSGAVYKAVILTMFFFLFLLYVGMETGYGGFIFTFAVKAKPSMT 1302


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,183,815
Number of Sequences: 59808
Number of extensions: 335000
Number of successful extensions: 803
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)