Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0346.Seq
         (707 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051470-1|AAK92894.1|  533|Drosophila melanogaster GH13725p pro...   130   1e-30
AE014298-2206|AAF48503.1|  533|Drosophila melanogaster CG8231-PA...   130   1e-30
AY118416-1|AAM48445.1|  557|Drosophila melanogaster RE70560p pro...    49   5e-06
AE014297-3168|AAN13906.1|  557|Drosophila melanogaster CG5374-PB...    49   5e-06
AE014297-3167|AAF56009.1|  557|Drosophila melanogaster CG5374-PA...    49   5e-06
M21159-1|AAA28927.1|  557|Drosophila melanogaster protein ( D.me...    49   7e-06
AY058756-1|AAL13985.1|  535|Drosophila melanogaster SD02216p pro...    48   9e-06
AE014298-1271|AAO41641.1|  533|Drosophila melanogaster CG7033-PC...    48   9e-06
AE014298-1270|AAN09241.1|  533|Drosophila melanogaster CG7033-PB...    48   9e-06
AE014298-1269|AAF46442.2|  535|Drosophila melanogaster CG7033-PA...    48   9e-06
AY058545-1|AAL13774.1|  546|Drosophila melanogaster LD24495p pro...    47   3e-05
AE013599-736|AAF59029.3|  546|Drosophila melanogaster CG8258-PA ...    47   3e-05
AY128484-1|AAM75077.1|  533|Drosophila melanogaster RE61939p pro...    41   0.002
AE014134-2227|AAF53210.1|  533|Drosophila melanogaster CG5525-PA...    41   0.002
X95602-1|CAA64860.1|  545|Drosophila melanogaster CCT-gamma prot...    36   0.054
U31961-17|AAA84416.1|  531|Drosophila melanogaster protein ( Dro...    36   0.054
AY089543-1|AAL90281.1|  544|Drosophila melanogaster LD20933p pro...    36   0.054
AE014297-2252|AAN13716.1|  544|Drosophila melanogaster CG8977-PB...    36   0.054
AE014297-2251|AAF55350.1|  544|Drosophila melanogaster CG8977-PA...    36   0.054

>AY051470-1|AAK92894.1|  533|Drosophila melanogaster GH13725p
           protein.
          Length = 533

 Score =  130 bits (315), Expect = 1e-30
 Identities = 61/76 (80%), Positives = 68/76 (89%)
 Frame = +1

Query: 256 GYDAQDTIVKLQEESRLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNL 435
           GYDAQDTIVKL  E RL+PE +GLDL+TGE  KP DLG+ DNYIVKKQILNSCS+IASNL
Sbjct: 458 GYDAQDTIVKLTVEDRLSPELVGLDLATGEPMKPVDLGVYDNYIVKKQILNSCSIIASNL 517

Query: 436 LLVDEIMRAGMSSLKG 483
           LLVDE+MRAGM+SLKG
Sbjct: 518 LLVDEVMRAGMTSLKG 533



 Score =  126 bits (303), Expect = 4e-29
 Identities = 57/84 (67%), Positives = 71/84 (84%)
 Frame = +2

Query: 2   SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
           S  I  + PNKHT+TQIKDA+RDGLRAINN I DK ++PGA AFE++A  EL+ +KDT+K
Sbjct: 373 SVTILIKGPNKHTITQIKDAIRDGLRAINNTIADKALVPGAGAFEVRAYNELVAFKDTIK 432

Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
           GK+RL +QA+A+ALLVIPKTLAVN
Sbjct: 433 GKSRLAVQAFADALLVIPKTLAVN 456


>AE014298-2206|AAF48503.1|  533|Drosophila melanogaster CG8231-PA
           protein.
          Length = 533

 Score =  130 bits (315), Expect = 1e-30
 Identities = 61/76 (80%), Positives = 68/76 (89%)
 Frame = +1

Query: 256 GYDAQDTIVKLQEESRLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNL 435
           GYDAQDTIVKL  E RL+PE +GLDL+TGE  KP DLG+ DNYIVKKQILNSCS+IASNL
Sbjct: 458 GYDAQDTIVKLTVEDRLSPELVGLDLATGEPMKPVDLGVYDNYIVKKQILNSCSIIASNL 517

Query: 436 LLVDEIMRAGMSSLKG 483
           LLVDE+MRAGM+SLKG
Sbjct: 518 LLVDEVMRAGMTSLKG 533



 Score =  126 bits (303), Expect = 4e-29
 Identities = 57/84 (67%), Positives = 71/84 (84%)
 Frame = +2

Query: 2   SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
           S  I  + PNKHT+TQIKDA+RDGLRAINN I DK ++PGA AFE++A  EL+ +KDT+K
Sbjct: 373 SVTILIKGPNKHTITQIKDAIRDGLRAINNTIADKALVPGAGAFEVRAYNELVAFKDTIK 432

Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
           GK+RL +QA+A+ALLVIPKTLAVN
Sbjct: 433 GKSRLAVQAFADALLVIPKTLAVN 456


>AY118416-1|AAM48445.1|  557|Drosophila melanogaster RE70560p
           protein.
          Length = 557

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 24/76 (31%), Positives = 41/76 (53%)
 Frame = +2

Query: 26  PNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQ 205
           PN     +++ +V D L  +   +E K V+ G    E   +  L  +  ++  + +L I 
Sbjct: 383 PNDFYCDEMERSVHDALCVVKRVLESKKVVAGGGCVEAALSIYLENFATSLASREQLAIA 442

Query: 206 AYAEALLVIPKTLAVN 253
            +A++LLVIPKTL+VN
Sbjct: 443 EFAKSLLVIPKTLSVN 458


>AE014297-3168|AAN13906.1|  557|Drosophila melanogaster CG5374-PB,
           isoform B protein.
          Length = 557

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 24/76 (31%), Positives = 41/76 (53%)
 Frame = +2

Query: 26  PNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQ 205
           PN     +++ +V D L  +   +E K V+ G    E   +  L  +  ++  + +L I 
Sbjct: 383 PNDFYCDEMERSVHDALCVVKRVLESKKVVAGGGCVEAALSIYLENFATSLASREQLAIA 442

Query: 206 AYAEALLVIPKTLAVN 253
            +A++LLVIPKTL+VN
Sbjct: 443 EFAKSLLVIPKTLSVN 458


>AE014297-3167|AAF56009.1|  557|Drosophila melanogaster CG5374-PA,
           isoform A protein.
          Length = 557

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 24/76 (31%), Positives = 41/76 (53%)
 Frame = +2

Query: 26  PNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQ 205
           PN     +++ +V D L  +   +E K V+ G    E   +  L  +  ++  + +L I 
Sbjct: 383 PNDFYCDEMERSVHDALCVVKRVLESKKVVAGGGCVEAALSIYLENFATSLASREQLAIA 442

Query: 206 AYAEALLVIPKTLAVN 253
            +A++LLVIPKTL+VN
Sbjct: 443 EFAKSLLVIPKTLSVN 458


>M21159-1|AAA28927.1|  557|Drosophila melanogaster protein (
           D.melanogaster T complexprotein 1 (Tcp-1) mRNA, complete
           cds. ).
          Length = 557

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 24/76 (31%), Positives = 41/76 (53%)
 Frame = +2

Query: 26  PNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQ 205
           PN     +++ +V D L  +   +E K V+ G    E   +  L  +  ++  + +L I 
Sbjct: 383 PNDFYCDEMERSVHDALCVVKRVLESKKVVRGGGCVEAALSIYLENFATSLASREQLAIA 442

Query: 206 AYAEALLVIPKTLAVN 253
            +A++LLVIPKTL+VN
Sbjct: 443 EFAKSLLVIPKTLSVN 458


>AY058756-1|AAL13985.1|  535|Drosophila melanogaster SD02216p
           protein.
          Length = 535

 Score = 48.4 bits (110), Expect = 9e-06
 Identities = 23/68 (33%), Positives = 39/68 (57%)
 Frame = +1

Query: 256 GYDAQDTIVKLQEESRLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNL 435
           GYD+   + +L+       + +GLD+  G+     +LGI +++ VK+Q+L S S  A  +
Sbjct: 455 GYDSAQLVSELRAGHAQGKQTLGLDMELGKVADVRELGITESFAVKRQVLMSASEAAEMI 514

Query: 436 LLVDEIMR 459
           L VD I+R
Sbjct: 515 LRVDNIIR 522


>AE014298-1271|AAO41641.1|  533|Drosophila melanogaster CG7033-PC,
           isoform C protein.
          Length = 533

 Score = 48.4 bits (110), Expect = 9e-06
 Identities = 23/68 (33%), Positives = 39/68 (57%)
 Frame = +1

Query: 256 GYDAQDTIVKLQEESRLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNL 435
           GYD+   + +L+       + +GLD+  G+     +LGI +++ VK+Q+L S S  A  +
Sbjct: 453 GYDSAQLVSELRAGHAQGKQTLGLDMELGKVADVRELGITESFAVKRQVLMSASEAAEMI 512

Query: 436 LLVDEIMR 459
           L VD I+R
Sbjct: 513 LRVDNIIR 520


>AE014298-1270|AAN09241.1|  533|Drosophila melanogaster CG7033-PB,
           isoform B protein.
          Length = 533

 Score = 48.4 bits (110), Expect = 9e-06
 Identities = 23/68 (33%), Positives = 39/68 (57%)
 Frame = +1

Query: 256 GYDAQDTIVKLQEESRLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNL 435
           GYD+   + +L+       + +GLD+  G+     +LGI +++ VK+Q+L S S  A  +
Sbjct: 453 GYDSAQLVSELRAGHAQGKQTLGLDMELGKVADVRELGITESFAVKRQVLMSASEAAEMI 512

Query: 436 LLVDEIMR 459
           L VD I+R
Sbjct: 513 LRVDNIIR 520


>AE014298-1269|AAF46442.2|  535|Drosophila melanogaster CG7033-PA,
           isoform A protein.
          Length = 535

 Score = 48.4 bits (110), Expect = 9e-06
 Identities = 23/68 (33%), Positives = 39/68 (57%)
 Frame = +1

Query: 256 GYDAQDTIVKLQEESRLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNL 435
           GYD+   + +L+       + +GLD+  G+     +LGI +++ VK+Q+L S S  A  +
Sbjct: 455 GYDSAQLVSELRAGHAQGKQTLGLDMELGKVADVRELGITESFAVKRQVLMSASEAAEMI 514

Query: 436 LLVDEIMR 459
           L VD I+R
Sbjct: 515 LRVDNIIR 522


>AY058545-1|AAL13774.1|  546|Drosophila melanogaster LD24495p
           protein.
          Length = 546

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 25/71 (35%), Positives = 37/71 (52%)
 Frame = +2

Query: 41  LTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQAYAEA 220
           +  I+ A+ D +        D   +PGA A EI+  T+L  Y DT+ G  +  ++ +A A
Sbjct: 385 MDDIERALDDAINNFKCLTRDGRYLPGAGATEIELATQLSAYADTLPGLDQYAVRKFANA 444

Query: 221 LLVIPKTLAVN 253
           L V PK LA N
Sbjct: 445 LEVFPKALAEN 455


>AE013599-736|AAF59029.3|  546|Drosophila melanogaster CG8258-PA
           protein.
          Length = 546

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 25/71 (35%), Positives = 37/71 (52%)
 Frame = +2

Query: 41  LTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQAYAEA 220
           +  I+ A+ D +        D   +PGA A EI+  T+L  Y DT+ G  +  ++ +A A
Sbjct: 385 MDDIERALDDAINNFKCLTRDGRYLPGAGATEIELATQLSAYADTLPGLDQYAVRKFANA 444

Query: 221 LLVIPKTLAVN 253
           L V PK LA N
Sbjct: 445 LEVFPKALAEN 455


>AY128484-1|AAM75077.1|  533|Drosophila melanogaster RE61939p
           protein.
          Length = 533

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 25/75 (33%), Positives = 38/75 (50%)
 Frame = +2

Query: 29  NKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQA 208
           NK  L +   ++ D L  +   ++ +  I G  A EI+   +L     TV+G      +A
Sbjct: 387 NKLVLEEAARSLHDALCVVRCLVKLRAQIVGGGAPEIEMALQLAALAQTVEGVDAYCFRA 446

Query: 209 YAEALLVIPKTLAVN 253
           +A+AL VIP TLA N
Sbjct: 447 FADALEVIPSTLAEN 461


>AE014134-2227|AAF53210.1|  533|Drosophila melanogaster CG5525-PA
           protein.
          Length = 533

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 25/75 (33%), Positives = 38/75 (50%)
 Frame = +2

Query: 29  NKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQA 208
           NK  L +   ++ D L  +   ++ +  I G  A EI+   +L     TV+G      +A
Sbjct: 387 NKLVLEEAARSLHDALCVVRCLVKLRAQIVGGGAPEIEMALQLAALAQTVEGVDAYCFRA 446

Query: 209 YAEALLVIPKTLAVN 253
           +A+AL VIP TLA N
Sbjct: 447 FADALEVIPSTLAEN 461


>X95602-1|CAA64860.1|  545|Drosophila melanogaster CCT-gamma protein
           protein.
          Length = 545

 Score = 35.9 bits (79), Expect = 0.054
 Identities = 27/84 (32%), Positives = 42/84 (50%)
 Frame = +2

Query: 2   SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
           +C I     +K  L + +  ++D L    N + +  ++ G  A E+ A+ +LL  K  VK
Sbjct: 374 ACTILLRGASKDILNETERNLQDALHVARNLVLEPRLVAGGGAVEMAAS-QLLTRKQ-VK 431

Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
           G       A A AL +IP+TLA N
Sbjct: 432 GP----YTAVAHALEIIPRTLAQN 451


>U31961-17|AAA84416.1|  531|Drosophila melanogaster protein (
           Drosophila melanogasterbithorax complex (BX-C), complete
           sequence. ).
          Length = 531

 Score = 35.9 bits (79), Expect = 0.054
 Identities = 27/84 (32%), Positives = 42/84 (50%)
 Frame = +2

Query: 2   SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
           +C I     +K  L + +  ++D L    N + +  ++ G  A E+ A+ +LL  K  VK
Sbjct: 360 ACTILLRGASKDILNETERNLQDALHVARNLVLEPRLVAGGGAVEMAAS-QLLTRKQ-VK 417

Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
           G       A A AL +IP+TLA N
Sbjct: 418 GP----YTAVAHALEIIPRTLAQN 437


>AY089543-1|AAL90281.1|  544|Drosophila melanogaster LD20933p
           protein.
          Length = 544

 Score = 35.9 bits (79), Expect = 0.054
 Identities = 27/84 (32%), Positives = 42/84 (50%)
 Frame = +2

Query: 2   SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
           +C I     +K  L + +  ++D L    N + +  ++ G  A E+ A+ +LL  K  VK
Sbjct: 373 ACTILLRGASKDILNETERNLQDALHVARNLVLEPRLVAGGGAVEMAAS-QLLTRKQ-VK 430

Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
           G       A A AL +IP+TLA N
Sbjct: 431 GP----YTAVAHALEIIPRTLAQN 450


>AE014297-2252|AAN13716.1|  544|Drosophila melanogaster CG8977-PB,
           isoform B protein.
          Length = 544

 Score = 35.9 bits (79), Expect = 0.054
 Identities = 27/84 (32%), Positives = 42/84 (50%)
 Frame = +2

Query: 2   SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
           +C I     +K  L + +  ++D L    N + +  ++ G  A E+ A+ +LL  K  VK
Sbjct: 373 ACTILLRGASKDILNETERNLQDALHVARNLVLEPRLVAGGGAVEMAAS-QLLTRKQ-VK 430

Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
           G       A A AL +IP+TLA N
Sbjct: 431 GP----YTAVAHALEIIPRTLAQN 450


>AE014297-2251|AAF55350.1|  544|Drosophila melanogaster CG8977-PA,
           isoform A protein.
          Length = 544

 Score = 35.9 bits (79), Expect = 0.054
 Identities = 27/84 (32%), Positives = 42/84 (50%)
 Frame = +2

Query: 2   SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
           +C I     +K  L + +  ++D L    N + +  ++ G  A E+ A+ +LL  K  VK
Sbjct: 373 ACTILLRGASKDILNETERNLQDALHVARNLVLEPRLVAGGGAVEMAAS-QLLTRKQ-VK 430

Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
           G       A A AL +IP+TLA N
Sbjct: 431 GP----YTAVAHALEIIPRTLAQN 450


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,307,870
Number of Sequences: 53049
Number of extensions: 505746
Number of successful extensions: 1166
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3128965752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)