Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0346.Seq
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13070-2|AAC46642.1| 539|Caenorhabditis elegans Chaperonin cont... 107 6e-24
U13070-3|AAM22058.1| 429|Caenorhabditis elegans Chaperonin cont... 50 2e-06
Z66500-12|CAA91308.1| 549|Caenorhabditis elegans Hypothetical p... 49 4e-06
U07941-1|AAB05072.1| 549|Caenorhabditis elegans CCT-1 protein. 49 4e-06
Z68318-10|CAA92697.1| 529|Caenorhabditis elegans Hypothetical p... 45 6e-05
U25632-1|AAA93233.1| 529|Caenorhabditis elegans CCT-2 protein. 45 6e-05
AL031268-2|CAA20331.1| 529|Caenorhabditis elegans Hypothetical ... 45 6e-05
Z49068-8|CAA88861.1| 540|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein. 43 2e-04
AC024136-4|AAF35963.3| 543|Caenorhabditis elegans Hypothetical ... 43 2e-04
AF067947-10|AAC19232.2| 535|Caenorhabditis elegans Hypothetical... 35 0.050
Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical pr... 28 7.5
>U13070-2|AAC46642.1| 539|Caenorhabditis elegans Chaperonin
containing tcp-1 protein6, isoform a protein.
Length = 539
Score = 107 bits (258), Expect = 6e-24
Identities = 51/78 (65%), Positives = 63/78 (80%)
Frame = +2
Query: 20 EAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLG 199
+ PNKHT+TQIKDA+ DGLRA+ N I DK V+PGAAAFEI A L K + +KG+A+LG
Sbjct: 381 KGPNKHTITQIKDAIHDGLRAVFNTIVDKAVLPGAAAFEIAAYVMLKKDVENLKGRAKLG 440
Query: 200 IQAYAEALLVIPKTLAVN 253
+A+A+ALLVIPKTLAVN
Sbjct: 441 AEAFAQALLVIPKTLAVN 458
Score = 81.0 bits (191), Expect = 8e-16
Identities = 43/77 (55%), Positives = 58/77 (75%), Gaps = 2/77 (2%)
Frame = +1
Query: 256 GYDAQDTIVKL-QEESRLNPE-PIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIAS 429
GYDAQ+T+VKL +E++ P+ +GLDL TG A +P GI DN VKK ++S +V+A
Sbjct: 460 GYDAQETLVKLIEEKTAAGPDIAVGLDLETGGAVEPQ--GIWDNVTVKKNSISSATVLAC 517
Query: 430 NLLLVDEIMRAGMSSLK 480
NLLLVDE+MRAGM++LK
Sbjct: 518 NLLLVDEVMRAGMTNLK 534
>U13070-3|AAM22058.1| 429|Caenorhabditis elegans Chaperonin
containing tcp-1 protein6, isoform b protein.
Length = 429
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +2
Query: 20 EAPNKHTLTQIKDAVRDGLRAINNAIEDKC 109
+ PNKHT+TQIKDA+ DGLRA+ N I D C
Sbjct: 381 KGPNKHTITQIKDAIHDGLRAVFNTIVDSC 410
>Z66500-12|CAA91308.1| 549|Caenorhabditis elegans Hypothetical
protein T05C12.7 protein.
Length = 549
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +2
Query: 29 NKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQA 208
N L +++ +V D L + +E K ++ G A E + L Y T+ + +L +
Sbjct: 384 NDVMLDEMERSVHDSLCVVRRVLESKKLVAGGGAVETSLSLFLETYAQTLSSREQLAVAE 443
Query: 209 YAEALLVIPKTLAVN 253
+A ALL+IPK LA N
Sbjct: 444 FASALLIIPKVLASN 458
>U07941-1|AAB05072.1| 549|Caenorhabditis elegans CCT-1 protein.
Length = 549
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +2
Query: 29 NKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQA 208
N L +++ +V D L + +E K ++ G A E + L Y T+ + +L +
Sbjct: 384 NDVMLDEMERSVHDSLCVVRRVLESKKLVAGGGAVETSLSLFLETYAQTLSSREQLAVAE 443
Query: 209 YAEALLVIPKTLAVN 253
+A ALL+IPK LA N
Sbjct: 444 FASALLIIPKVLASN 458
>Z68318-10|CAA92697.1| 529|Caenorhabditis elegans Hypothetical
protein T21B10.7 protein.
Length = 529
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/69 (28%), Positives = 40/69 (57%)
Frame = +1
Query: 256 GYDAQDTIVKLQEESRLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNL 435
G D+ + + +L+ E +G+D+ GE T LG++++Y VK +++S + +
Sbjct: 449 GLDSAELVTRLRAEHANGRHNMGIDIEKGEVADVTKLGVIESYNVKLCMVSSAAEATEQI 508
Query: 436 LLVDEIMRA 462
L VD+I++A
Sbjct: 509 LRVDDIIKA 517
>U25632-1|AAA93233.1| 529|Caenorhabditis elegans CCT-2 protein.
Length = 529
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/69 (28%), Positives = 40/69 (57%)
Frame = +1
Query: 256 GYDAQDTIVKLQEESRLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNL 435
G D+ + + +L+ E +G+D+ GE T LG++++Y VK +++S + +
Sbjct: 449 GLDSAELVTRLRAEHANGRHNMGIDIEKGEVADVTKLGVIESYNVKLCMVSSAAEATEQI 508
Query: 436 LLVDEIMRA 462
L VD+I++A
Sbjct: 509 LRVDDIIKA 517
>AL031268-2|CAA20331.1| 529|Caenorhabditis elegans Hypothetical
protein T21B10.7 protein.
Length = 529
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/69 (28%), Positives = 40/69 (57%)
Frame = +1
Query: 256 GYDAQDTIVKLQEESRLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNL 435
G D+ + + +L+ E +G+D+ GE T LG++++Y VK +++S + +
Sbjct: 449 GLDSAELVTRLRAEHANGRHNMGIDIEKGEVADVTKLGVIESYNVKLCMVSSAAEATEQI 508
Query: 436 LLVDEIMRA 462
L VD+I++A
Sbjct: 509 LRVDDIIKA 517
>Z49068-8|CAA88861.1| 540|Caenorhabditis elegans Hypothetical
protein K01C8.10 protein.
Length = 540
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +2
Query: 29 NKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQA 208
NK L + ++ D L I ++ K ++PG A E++ +L T G + +A
Sbjct: 394 NKLVLEEADRSIHDALCVIRCLVKKKALLPGGGAPEMEIAVKLRNLAQTQHGATQYCWRA 453
Query: 209 YAEALLVIPKTLAVN 253
+A+AL +IP TLA N
Sbjct: 454 FADALELIPYTLAEN 468
>U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein.
Length = 540
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +2
Query: 29 NKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQA 208
NK L + ++ D L I ++ K ++PG A E++ +L T G + +A
Sbjct: 394 NKLVLEEADRSIHDALCVIRCLVKKKALLPGGGAPEMEIAVKLRNLAQTQHGATQYCWRA 453
Query: 209 YAEALLVIPKTLAVN 253
+A+AL +IP TLA N
Sbjct: 454 FADALELIPYTLAEN 468
>AC024136-4|AAF35963.3| 543|Caenorhabditis elegans Hypothetical
protein F54A3.3 protein.
Length = 543
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/84 (25%), Positives = 43/84 (51%)
Frame = +2
Query: 2 SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
+C + P+K + +++ ++D L + N + + ++PG A E+ + E+ + +
Sbjct: 373 ACTVVLRGPSKDVINEVERNLQDSLHVVRNIMINPKLVPGGGALEMALSREIEQQGAKMD 432
Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
G + +A AL VIP+TL N
Sbjct: 433 GVKKWPYKAIGLALEVIPRTLIQN 456
>AF067947-10|AAC19232.2| 535|Caenorhabditis elegans Hypothetical
protein T10B5.5a protein.
Length = 535
Score = 35.1 bits (77), Expect = 0.050
Identities = 15/84 (17%), Positives = 41/84 (48%)
Frame = +2
Query: 2 SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
+C + + + + + ++ D + + A ++ ++ G A E++ + + ++ ++
Sbjct: 367 ACTLLLRGGAEQFIAETERSLHDAIMIVRRAKKNDSIVAGGGAIEMELSRLIREHSKGIE 426
Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
GK + AY +A +IP+ L N
Sbjct: 427 GKDQAFWMAYGQAFEIIPRQLCQN 450
>Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical
protein R03E1.3 protein.
Length = 502
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = -1
Query: 488 YYPLRLLIPALIISSTRRRLLAITEQEFNICFFTI*LSKIPKSVGLNASPVLKSKPIGSG 309
Y+ L +L P + ++ LL + +ICFFTI L+ I +S S +L P GSG
Sbjct: 259 YFSLSILFP--MAGTSLILLLCFWIETHSICFFTIMLNIILQS--YYGSSLLAKMPPGSG 314
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,545,717
Number of Sequences: 27780
Number of extensions: 260320
Number of successful extensions: 709
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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