Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0346.Seq
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 108 3e-24
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 107 9e-24
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 50 2e-06
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 50 2e-06
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 48 5e-06
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 46 2e-05
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 39 0.003
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 39 0.004
At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative St... 29 2.3
At3g62820.1 68416.m07058 invertase/pectin methylesterase inhibit... 28 7.0
At3g16630.2 68416.m02126 kinesin motor family protein similar to... 28 7.0
At3g16630.1 68416.m02125 kinesin motor family protein similar to... 28 7.0
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 108 bits (260), Expect = 3e-24
Identities = 51/85 (60%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELL-KYKDTV 178
SC I + PN HT+ QIKDAVRDGLR++ N IED+CV+ GA AFE+ A LL + K TV
Sbjct: 373 SCTILIKGPNDHTIAQIKDAVRDGLRSVKNTIEDECVVLGAGAFEVAARQHLLNEVKKTV 432
Query: 179 KGKARLGIQAYAEALLVIPKTLAVN 253
+G+A+LG++A+A ALLV+PKTLA N
Sbjct: 433 QGRAQLGVEAFANALLVVPKTLAEN 457
Score = 69.7 bits (163), Expect = 2e-12
Identities = 37/75 (49%), Positives = 46/75 (61%)
Frame = +1
Query: 256 GYDAQDTIVKLQEESRLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNL 435
G D QD I+ L E +GL+L GE P GI DNY VK+Q++NS VIAS L
Sbjct: 459 GLDTQDVIISLTSEHDKG-NVVGLNLQDGEPIDPQLAGIFDNYSVKRQLINSGPVIASQL 517
Query: 436 LLVDEIMRAGMSSLK 480
LLVDE++RAG + K
Sbjct: 518 LLVDEVIRAGRNMRK 532
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 107 bits (256), Expect = 9e-24
Identities = 49/85 (57%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELL-KYKDTV 178
SC I + PN HT+ QIKDAVRDGLR++ N +ED+CV+ GA AFE+ A L+ + K TV
Sbjct: 374 SCTILIKGPNDHTIAQIKDAVRDGLRSVKNTLEDECVVLGAGAFEVAARQHLINEVKKTV 433
Query: 179 KGKARLGIQAYAEALLVIPKTLAVN 253
+G+A+LG++A+A ALLV+PKTLA N
Sbjct: 434 QGRAQLGVEAFANALLVVPKTLAEN 458
Score = 70.9 bits (166), Expect = 8e-13
Identities = 38/75 (50%), Positives = 46/75 (61%)
Frame = +1
Query: 256 GYDAQDTIVKLQEESRLNPEPIGLDLSTGEAFKPTDLGILDNYIVKKQILNSCSVIASNL 435
G D QD I+ L E +GLDL GE P GI DNY VK+Q++NS VIAS L
Sbjct: 460 GLDTQDVIISLTSEHDKG-NIVGLDLQDGEPVDPQLAGIFDNYSVKRQLINSGPVIASQL 518
Query: 436 LLVDEIMRAGMSSLK 480
LLVDE++RAG + K
Sbjct: 519 LLVDEVIRAGRNMRK 533
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/71 (29%), Positives = 44/71 (61%)
Frame = +2
Query: 41 LTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQAYAEA 220
+ + + ++ D + + A+++ V+PG A +++ + L ++ T+ GK++L I +YA+A
Sbjct: 385 IEEAERSLHDAIMIVRRAVKNSTVVPGGGAIDMEISKYLRQHSRTIAGKSQLFINSYAKA 444
Query: 221 LLVIPKTLAVN 253
L VIP+ L N
Sbjct: 445 LEVIPRQLCDN 455
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +2
Query: 29 NKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQA 208
N + L +++ A+ D L + +E V+ G A E + L T+ + +L I
Sbjct: 384 NDYMLDEMERALHDALCIVKRTLESNTVVAGGGAVESALSVYLEHLATTLGSREQLAIAE 443
Query: 209 YAEALLVIPKTLAVN 253
+A+ALL+IPK LAVN
Sbjct: 444 FADALLIIPKVLAVN 458
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/71 (36%), Positives = 37/71 (52%)
Frame = +2
Query: 41 LTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQAYAEA 220
L ++ AV DG+ D ++PGAAA EI+ L +Y + G + I YAE+
Sbjct: 388 LDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELAQRLKEYANAEIGLDKYAITKYAES 447
Query: 221 LLVIPKTLAVN 253
+PKTLA N
Sbjct: 448 FEFVPKTLADN 458
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/84 (26%), Positives = 44/84 (52%)
Frame = +2
Query: 2 SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
+C + P+K + +++ ++D + N I++ ++PG A E+ + L + T++
Sbjct: 371 ACTVLLRGPSKDFINEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSATIE 430
Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
G + +A A A IP+TLA N
Sbjct: 431 GIEKWPYEAAAIAFEAIPRTLAQN 454
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/75 (29%), Positives = 40/75 (53%)
Frame = +2
Query: 29 NKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLGIQA 208
N+ L + + ++ D L + + + +I G A EI+ + +L + + G +++
Sbjct: 391 NQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVKS 450
Query: 209 YAEALLVIPKTLAVN 253
+AEAL VIP TLA N
Sbjct: 451 FAEALEVIPYTLAEN 465
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/84 (26%), Positives = 40/84 (47%)
Frame = +2
Query: 2 SCRIRHEAPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVK 181
+C I + H L + + ++ D L ++ + D V+ G E+ E+ +
Sbjct: 365 ACSIVLRGASHHVLDEAERSLHDALCVLSQTVNDTRVLLGGGWPEMVMAKEVDELARKTA 424
Query: 182 GKARLGIQAYAEALLVIPKTLAVN 253
GK I+A++ AL+ IP T+A N
Sbjct: 425 GKKSHAIEAFSRALVAIPTTIADN 448
>At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative
Strong similarity to beta-keto-Coa synthase gb|U37088
from Simmondsia chinensis, GI:4091810
Length = 528
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 316 PIGLDLSTGEAFKPTDLGILDNYIVKKQILNS 411
P+GL +T +F TDL +L N+++K L+S
Sbjct: 52 PVGLLAATSSSFSLTDLTLLYNHLLKFHFLSS 83
>At3g62820.1 68416.m07058 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q43867, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 194
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -3
Query: 180 LTVSLYFSSSVLALISKAAAPGM 112
+T S+Y SS+ LAL++K AA G+
Sbjct: 172 VTTSMYLSSNSLALLNKLAANGL 194
>At3g16630.2 68416.m02126 kinesin motor family protein similar to
mitotic centromere-associated kinesin GB:AAC27660 from
[Homo sapiens]; contains Pfam profile PF00225: Kinesin
motor domain
Length = 794
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 44 TQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLG 199
+++ + +RD + + C+ P A + E NT L+Y D VK ++ G
Sbjct: 481 SKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNT--LRYADRVKSLSKSG 530
>At3g16630.1 68416.m02125 kinesin motor family protein similar to
mitotic centromere-associated kinesin GB:AAC27660 from
[Homo sapiens]; contains Pfam profile PF00225: Kinesin
motor domain
Length = 794
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 44 TQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKANTELLKYKDTVKGKARLG 199
+++ + +RD + + C+ P A + E NT L+Y D VK ++ G
Sbjct: 481 SKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNT--LRYADRVKSLSKSG 530
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,586,152
Number of Sequences: 28952
Number of extensions: 238357
Number of successful extensions: 566
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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