Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0344.Seq
         (856 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3; Eukaryo...    64   6e-09
UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1; ...    45   0.003
UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular organ...    45   0.003
UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: L...    45   0.003
UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep: Bet...    45   0.003
UniRef50_Q0WWS3 Cluster: Putative uncharacterized protein; n=1; ...    35   3.0  
UniRef50_Q5DH93 Cluster: Putative uncharacterized protein; n=1; ...    33   9.2  

>UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3;
           Eukaryota|Rep: beta-galactosidase - Entamoeba
           histolytica HM-1:IMSS
          Length = 86

 Score = 63.7 bits (148), Expect = 6e-09
 Identities = 29/42 (69%), Positives = 32/42 (76%)
 Frame = +1

Query: 598 HWPSFTTS*LGKTWALPNLIALEHIPLSPXGVITXKARXDXP 723
           HWPSF     GKT ALPNLIAL+HIPLSP GVI+ +AR D P
Sbjct: 5   HWPSFYNVVTGKTLALPNLIALQHIPLSPAGVISEEARTDRP 46


>UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1;
           Erwinia amylovora|Rep: Putative uncharacterized protein
           - Erwinia amylovora (Fire blight bacteria)
          Length = 123

 Score = 44.8 bits (101), Expect = 0.003
 Identities = 21/34 (61%), Positives = 23/34 (67%)
 Frame = +3

Query: 600 LAVVYNVVTGKNLGVTQLNRLGAHPPFXXWXNNE 701
           LAVV      +N GVTQLNRL AHPPF  W N+E
Sbjct: 68  LAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSE 101


>UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular
           organisms|Rep: LacZ-alpha peptide - Escherichia coli
          Length = 90

 Score = 44.8 bits (101), Expect = 0.003
 Identities = 21/34 (61%), Positives = 23/34 (67%)
 Frame = +3

Query: 600 LAVVYNVVTGKNLGVTQLNRLGAHPPFXXWXNNE 701
           LAVV      +N GVTQLNRL AHPPF  W N+E
Sbjct: 22  LAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSE 55


>UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: LacZ
           protein - Phage M13mp18
          Length = 102

 Score = 44.8 bits (101), Expect = 0.003
 Identities = 21/34 (61%), Positives = 23/34 (67%)
 Frame = +3

Query: 600 LAVVYNVVTGKNLGVTQLNRLGAHPPFXXWXNNE 701
           LAVV      +N GVTQLNRL AHPPF  W N+E
Sbjct: 26  LAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSE 59


>UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep:
           Beta-galactosidase - Escherichia coli (strain K12)
          Length = 1024

 Score = 44.8 bits (101), Expect = 0.003
 Identities = 21/34 (61%), Positives = 23/34 (67%)
 Frame = +3

Query: 600 LAVVYNVVTGKNLGVTQLNRLGAHPPFXXWXNNE 701
           LAVV      +N GVTQLNRL AHPPF  W N+E
Sbjct: 8   LAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSE 41


>UniRef50_Q0WWS3 Cluster: Putative uncharacterized protein; n=1;
           Arabidopsis thaliana|Rep: Putative uncharacterized
           protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 80

 Score = 34.7 bits (76), Expect = 3.0
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +3

Query: 30  MKNAVNCAS*CELQDTFEHRHFERTLR 110
           MKN   C + CELQ+   HR FER LR
Sbjct: 1   MKNVAKCDTWCELQNPVNHRVFERKLR 27


>UniRef50_Q5DH93 Cluster: Putative uncharacterized protein; n=1;
          Schistosoma japonicum|Rep: Putative uncharacterized
          protein - Schistosoma japonicum (Blood fluke)
          Length = 106

 Score = 33.1 bits (72), Expect = 9.2
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 71 LQFTL*RAVNCVLHRPASQVIHR 3
          +QFTL   V C LHR  S+VIHR
Sbjct: 1  MQFTLIHTVGCTLHRHTSRVIHR 23


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 711,480,025
Number of Sequences: 1657284
Number of extensions: 11969094
Number of successful extensions: 25678
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25670
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75423184424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)