Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0344.Seq
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0510 + 24420402-24422582                                         31   1.2  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    31   1.5  
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557...    29   4.7  
05_03_0368 - 13127536-13128429                                         29   6.2  

>11_06_0510 + 24420402-24422582
          Length = 726

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 172 D*CFLCSRPSDRSGPGCVSTDRNVRSKC-RCSNVSCSSHYDAQ 47
           D CF  + P+D+   GC S   +  SKC RC   S S + DA+
Sbjct: 504 DLCFYANHPADKDDDGCCSCSSS--SKCLRCLCSSSSGYPDAE 544


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 442 TTKIHIHEKLYAHAKHNARAREVRRDYENF 353
           T K+H+H+ ++  A+H A  R  +RD  NF
Sbjct: 460 TLKLHMHDMVHELARHVAENRNTKRDNLNF 489


>07_01_0733 +
           5570084-5570282,5570395-5570600,5572484-5572624,
           5572773-5572949,5573049-5573145,5573575-5573687,
           5573774-5573896,5574004-5574075,5575340-5575432,
           5575564-5575674,5575767-5575889,5576834-5576890,
           5576939-5577022,5577140-5577214,5577418-5577554,
           5577719-5577853,5579029-5579168,5579334-5579399,
           5579732-5579838,5579910-5579990,5580064-5580138,
           5580224-5580325,5581837-5582005,5582090-5582217,
           5582596-5582679,5582779-5582879,5583729-5583882,
           5583964-5584038,5584112-5584262,5584463-5585078,
           5585427-5585487,5585874-5586019,5586104-5586287,
           5586363-5586440,5586603-5586931,5587023-5587199,
           5587571-5587667,5587742-5587897,5587962-5588198,
           5588271-5588354,5588426-5588486,5588762-5588898
          Length = 1912

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 43  LTARHS-VNCRTHLNIDISNAHCGPWRHIQDHSCLRAGC-IKNINHIAWLVPRS*SV 207
           L+A+ S +NC + +  +IS  H G   H    + + AGC ++ + H+    P+  +V
Sbjct: 725 LSAKQSLINCASDIPSEISQMHAGSVFHGYVCNIIEAGCFVRFLGHLTGFSPKDKAV 781


>05_03_0368 - 13127536-13128429
          Length = 297

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/63 (23%), Positives = 26/63 (41%)
 Frame = -1

Query: 481 RLIQRQQQNNETKTTKIHIHEKLYAHAKHNARAREVRRDYENFEITIKHF*IRRRDELAK 302
           R  +   + +  K  K   H K     +   R+R  RR Y++      H  +RRR    +
Sbjct: 231 RSCEEDSETDSDKKIKRRHHRKSSKEERERGRSRHRRRSYDDDSSDDDHHTLRRRRRRRR 290

Query: 301 RDS 293
           +D+
Sbjct: 291 KDA 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,145,761
Number of Sequences: 37544
Number of extensions: 324424
Number of successful extensions: 763
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)