Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0344.Seq
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75527-4|CAA99779.2|  316|Caenorhabditis elegans Hypothetical pr...    29   4.2  
DQ178236-1|ABA18178.1|  316|Caenorhabditis elegans putative low ...    29   4.2  
AF016682-3|AAB66186.2|  308|Caenorhabditis elegans Hypothetical ...    28   9.7  

>Z75527-4|CAA99779.2|  316|Caenorhabditis elegans Hypothetical
           protein C15C8.4 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -1

Query: 451 ETKTTKIHIHEKLYAHAKHNA--RAREVRRDYENFEITIKHF*IRRR 317
           E++  KI  H++  +  + +A  R ++  + YEN E++IKH  + R+
Sbjct: 252 ESQLKKIEFHKEEVSRLQEDAEERGKDKSQVYENLELSIKHEKLNRK 298


>DQ178236-1|ABA18178.1|  316|Caenorhabditis elegans putative low
           density lipoproteinreceptor associated protein (37.4 kD)
           protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -1

Query: 451 ETKTTKIHIHEKLYAHAKHNA--RAREVRRDYENFEITIKHF*IRRR 317
           E++  KI  H++  +  + +A  R ++  + YEN E++IKH  + R+
Sbjct: 252 ESQLKKIEFHKEEVSRLQEDAEERGKDKSQVYENLELSIKHEKLNRK 298


>AF016682-3|AAB66186.2|  308|Caenorhabditis elegans Hypothetical
           protein T07D3.6 protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 450 KPRRQKFIYTRNSTRTLNITRAPERFDVIMKIL 352
           K R+QKF Y++N T   N TR P      + IL
Sbjct: 61  KSRKQKFTYSQNVTLLPNNTRVPIYHPTCISIL 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,281,176
Number of Sequences: 27780
Number of extensions: 283941
Number of successful extensions: 632
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)