Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0344.Seq
         (856 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   2.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.7  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 409 AHAKHNARAREVRRDYENFEITIKHF 332
           AH   N+RA     DY     T+K+F
Sbjct: 127 AHGTGNSRANTYNFDYPQVPYTVKNF 152


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 350 NNNKTFLDPSERRASETRFVIVVFGQILI 264
           N+N T L P + R +E   V +VF  +L+
Sbjct: 20  NSNYTELLPIDMRFNEGHIVSIVFYSVLM 48


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 478  LIQRQQQNNETKTTKIHIHEKLYAHAKHNARARE 377
            ++Q+QQQ  + +  +    ++     +H AR RE
Sbjct: 1207 MVQQQQQQQQQQQQQQQQQQQQQQQQQHQARERE 1240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,487
Number of Sequences: 438
Number of extensions: 3564
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)