Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0344.Seq
         (856 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26190.1 68418.m03116 DC1 domain-containing protein contains ...    28   6.9  
At2g02660.1 68415.m00205 hypothetical protein                          28   9.1  
At1g23140.1 68414.m02892 C2 domain-containing protein similar to...    28   9.1  

>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 556

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 166 CFLCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFI 29
           C  C RPS+    G      NV+   RC+ +S   ++D+ L + FI
Sbjct: 350 CVACQRPSN----GFRYESGNVKLDVRCATISDEFNHDSHLHSLFI 391


>At2g02660.1 68415.m00205 hypothetical protein
          Length = 421

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 232 RSYSSLRVFYLIKI*PKTTITNRVSLARLSDGSKNVLLLFQNFHNHVEPL 381
           R Y+S + FY+    P++    RV      +  K      + F NHVE L
Sbjct: 334 RKYTSKQPFYVFYFNPESNTLQRVETQGFGEAFKAETCSVRTFVNHVENL 383


>At1g23140.1 68414.m02892 C2 domain-containing protein similar to
           zinc finger and C2 domain protein GI:9957238 from
           [Arabidopsis thaliana]
          Length = 165

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 160 LCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFIDP 23
           L SR S+ S P  V T  + + K R    SC+  +D +LT    DP
Sbjct: 18  LVSRDSNTSDPFVVVTMGSQKLKTRGVENSCNPEWDDELTLGINDP 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,250,353
Number of Sequences: 28952
Number of extensions: 255099
Number of successful extensions: 547
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)