Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0343.Seq
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    94   1e-20
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    93   3e-20
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    27   1.9  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   9.9  
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    25   9.9  

>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 49/111 (44%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
 Frame = +3

Query: 153 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKTVMMQSFYAGKHCVYVYRAKKRTP 329
           P  G RLY KA    ++R     H  T+++K+EG  +     FY GK   YVY++ K   
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAV- 60

Query: 330 IPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLY 482
                RG  +K+R IWG + RPHGNSG+VRA+F  NLPA+  G  +RVMLY
Sbjct: 61  -----RG--SKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLY 104


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 92.7 bits (220), Expect = 3e-20
 Identities = 49/111 (44%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
 Frame = +3

Query: 153 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKTVMMQSFYAGKHCVYVYRAKKRTP 329
           P  G RLY KA    ++R     H  T+L+K+EG  +     FY GK   +VY++ K  P
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNK--P 59

Query: 330 IPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLY 482
           + G      +K+R IWG V+RPHGNSG VRA+F  NLP +  G  +RVMLY
Sbjct: 60  VRG------SKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLY 104


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 386 HLAPDSTQLGFFATGTSGNWCPLLSSVHIDAMLAS 282
           ++ P  T LGFF   T  N  P    VH  +M AS
Sbjct: 333 NIIPVETALGFFTDNTPENPLPTSYQVHSHSMKAS 367


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 388 PAHMATLAVSEPSSSLTSLPRLWDTEY 468
           P     L V EP   +TSLPR WD  Y
Sbjct: 308 PTSTKRLTVLEP---ITSLPRKWDPLY 331


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = +3

Query: 237 LKVEGAKTVMMQSFYAGKH---CVY 302
           +K +  KT +   FYAGKH   CVY
Sbjct: 66  IKEKTEKTKLSSLFYAGKHEYFCVY 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,320
Number of Sequences: 5004
Number of extensions: 39481
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)