Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0343.Seq
(556 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 116 1e-26
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 115 3e-26
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 103 7e-23
12_01_0899 - 8689125-8689383,8689540-8689826 33 0.12
09_04_0222 + 15825878-15826451,15826542-15827017 29 2.5
09_04_0201 + 15543318-15543488,15543956-15544069 29 3.3
09_02_0445 + 9446171-9447496 29 3.3
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220... 29 3.3
12_02_1225 - 27164595-27164842,27164959-27165133,27165213-271653... 28 4.4
04_01_0053 + 551027-553024 28 4.4
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 27 7.6
08_02_1161 + 24805777-24806356,24806447-24806922 27 7.6
06_03_0608 + 22705321-22705652,22705809-22706178,22706264-227066... 27 7.6
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 116 bits (279), Expect = 1e-26
Identities = 56/106 (52%), Positives = 71/106 (66%)
Frame = +3
Query: 165 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKTVMMQSFYAGKHCVYVYRAKKRTPIPGGP 344
RLY + GYKR NQ+ENT+L+++EG T ++Y GK YVY+AK ++ GG
Sbjct: 11 RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKS---GG- 66
Query: 345 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLY 482
T R IWGKVTRPHGNSG VRAKFKSNLP +MG ++RV +Y
Sbjct: 67 ----TNYRCIWGKVTRPHGNSGVVRAKFKSNLPPASMGRKVRVFMY 108
>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
Length = 111
Score = 115 bits (276), Expect = 3e-26
Identities = 55/114 (48%), Positives = 73/114 (64%)
Frame = +3
Query: 141 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKTVMMQSFYAGKHCVYVYRAKK 320
K + + RLY + GYKR NQ+ENT+LL++EG T +YAGK YVY+AK
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61
Query: 321 RTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLY 482
++ + +R IWGKVTRPHGNSG VRAKF+SNLP +MG ++RV +Y
Sbjct: 62 KS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKVRVFMY 107
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 103 bits (248), Expect = 7e-23
Identities = 51/105 (48%), Positives = 66/105 (62%)
Frame = +3
Query: 141 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKTVMMQSFYAGKHCVYVYRAKK 320
K + + RLY + GYKR NQ+ENT+LL++EG T +YAGK YVY+AK
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61
Query: 321 RTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAM 455
++ + +R IWGKVTRPHGNSG VRAKF+SNLP +M
Sbjct: 62 KS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98
>12_01_0899 - 8689125-8689383,8689540-8689826
Length = 181
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 490 PGRYSITRILCPIAWAGRLDLNLART-LPELPCGRVTLPQIARSLVFLPRGPP 335
P R + R+L P + A R + AR LPE PC R+ LP+ + LP PP
Sbjct: 10 PARGAAARLLLPASGAARGAV--ARLPLPEPPCARLLLPEPPWGMAALPPEPP 60
>09_04_0222 + 15825878-15826451,15826542-15827017
Length = 349
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 490 PGRYSITRILCPIAWAGRLDLNLARTLPELPCGRVTLPQ 374
P R + R+L P++ A R LPE PC R+ LP+
Sbjct: 10 PARGAAARLLLPVSGAAR-GAAARLPLPEPPCTRLPLPE 47
>09_04_0201 + 15543318-15543488,15543956-15544069
Length = 94
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 394 GRVTLPQIARSLVFLPRGPPGIGVLFL 314
GR+ PQ + S V PRG PG+ VL L
Sbjct: 6 GRLPRPQGSSSAVPRPRGLPGVSVLLL 32
>09_02_0445 + 9446171-9447496
Length = 441
Score = 28.7 bits (61), Expect = 3.3
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Frame = -3
Query: 416 DTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSVHIDAMLASIKRLHHYGL--CS-- 249
+T W GH P + F++G G W S D L S++ ++ G CS
Sbjct: 220 ETPYCGYWHGHGTPPRPRAYVFSSGVDGGWRE--SDSGSDVELPSLELINFVGRAGCSLY 277
Query: 248 FNLEESGVLVLVA*TTLISCEYGLCVQPAVAG 153
+ L+ ++ + TT E+ L PA+ G
Sbjct: 278 WGLDGKDAMLALHKTT---AEFSLVTIPAIVG 306
>07_01_0308 +
2203597-2203774,2203886-2204066,2204141-2204282,
2204371-2204440,2204546-2204715
Length = 246
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 359 GFFATGTSGNWCPLLSSVHIDAMLA 285
GFFA G+WC LL+ ++I + A
Sbjct: 171 GFFAAAIIGSWCNLLTVIYIGFVCA 195
>12_02_1225 -
27164595-27164842,27164959-27165133,27165213-27165307,
27165391-27165444,27165794-27165868,27165961-27166081,
27166494-27166549,27166698-27166762,27166962-27167050,
27167155-27167812,27168182-27168202,27168777-27168859,
27169081-27169136,27169413-27169619,27170628-27170760
Length = 711
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -1
Query: 493 DPGRYSITRILCPIAWAGRLDLNLARTLPELPCGRV 386
DPGR + P+ WA LDL LAR P + RV
Sbjct: 209 DPGRV----VSPPLMWAEALDLLLARLAPRVDYARV 240
>04_01_0053 + 551027-553024
Length = 665
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = -3
Query: 401 AMWAGHLA-----PDSTQLGFFATGTSGNWCPLLS 312
A++AGHL P+ +GFFA+G+ G LLS
Sbjct: 231 AIFAGHLTMSNRVPNKAYIGFFASGSDGETYGLLS 265
>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 346 VAKKPSCVLSGAR*PAHMATLAVSEP--SSSLTSLPRLWDTEYE*C 477
+A +P+CVL G + T + ++ SSS+ RLWDT + C
Sbjct: 1230 LADQPACVLEGHQDDVLDLTWSKTDQLLSSSMDKTVRLWDTTTKAC 1275
>08_02_1161 + 24805777-24806356,24806447-24806922
Length = 351
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 490 PGRYSITRILCPIAWAGRLDLNLARTLPELPCGRVTLPQ 374
P R + R+L P + A R LPE PC R+ LP+
Sbjct: 12 PARGAAARLLLPASGAAR-GAAARLPLPEPPCTRLPLPE 49
>06_03_0608 +
22705321-22705652,22705809-22706178,22706264-22706656,
22707183-22707204,22707257-22707928,22708019-22708494
Length = 754
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 490 PGRYSITRILCPIAWAGRLDLNLARTLPELPCGRVTLPQ 374
P R + R+L P + A R LPE PC R+ LP+
Sbjct: 12 PARGAAARLLLPASGAAR-GAAARLPLPEPPCTRLLLPE 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,631,052
Number of Sequences: 37544
Number of extensions: 321505
Number of successful extensions: 871
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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