Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0343.Seq
(556 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a ... 152 7e-37
BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein. 152 7e-37
BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a ... 152 7e-37
BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a ... 152 7e-37
AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting ... 152 7e-37
X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for ... 149 5e-36
AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a ... 115 1e-25
X94619-1|CAA64325.1| 21|Homo sapiens ribosomal protein L35a pr... 38 0.018
M74088-1|AAA03586.1| 2843|Homo sapiens APC protein. 32 1.6
M73548-2|AAA60354.1| 2743|Homo sapiens polyposis locus-encoded p... 32 1.6
M73548-1|AAA60353.1| 2844|Homo sapiens polyposis locus-encoded p... 32 1.6
AB210001-1|BAE06083.1| 2845|Homo sapiens APC variant protein pro... 32 1.6
AK126039-1|BAC86408.1| 214|Homo sapiens protein ( Homo sapiens ... 30 4.7
X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein. 30 6.3
>BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 152 bits (369), Expect = 7e-37
Identities = 72/107 (67%), Positives = 81/107 (75%)
Frame = +3
Query: 162 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKTVMMQSFYAGKHCVYVYRAKKRTPIPGG 341
GRL++KA+F GYKRGLRNQ E+TALLK+EG FY GK C YVY+AK T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 342 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLY 482
GK K R IWGKVTR HGNSG VRAKF+SNLPA+A+GHRIRVMLY
Sbjct: 62 --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLY 106
>BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein.
Length = 110
Score = 152 bits (369), Expect = 7e-37
Identities = 72/107 (67%), Positives = 81/107 (75%)
Frame = +3
Query: 162 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKTVMMQSFYAGKHCVYVYRAKKRTPIPGG 341
GRL++KA+F GYKRGLRNQ E+TALLK+EG FY GK C YVY+AK T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 342 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLY 482
GK K R IWGKVTR HGNSG VRAKF+SNLPA+A+GHRIRVMLY
Sbjct: 62 --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLY 106
>BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 152 bits (369), Expect = 7e-37
Identities = 72/107 (67%), Positives = 81/107 (75%)
Frame = +3
Query: 162 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKTVMMQSFYAGKHCVYVYRAKKRTPIPGG 341
GRL++KA+F GYKRGLRNQ E+TALLK+EG FY GK C YVY+AK T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 342 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLY 482
GK K R IWGKVTR HGNSG VRAKF+SNLPA+A+GHRIRVMLY
Sbjct: 62 --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLY 106
>BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 152 bits (369), Expect = 7e-37
Identities = 72/107 (67%), Positives = 81/107 (75%)
Frame = +3
Query: 162 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKTVMMQSFYAGKHCVYVYRAKKRTPIPGG 341
GRL++KA+F GYKRGLRNQ E+TALLK+EG FY GK C YVY+AK T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 342 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLY 482
GK K R IWGKVTR HGNSG VRAKF+SNLPA+A+GHRIRVMLY
Sbjct: 62 --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLY 106
>AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting
protein 33 protein.
Length = 110
Score = 152 bits (369), Expect = 7e-37
Identities = 72/107 (67%), Positives = 81/107 (75%)
Frame = +3
Query: 162 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKTVMMQSFYAGKHCVYVYRAKKRTPIPGG 341
GRL++KA+F GYKRGLRNQ E+TALLK+EG FY GK C YVY+AK T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 342 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLY 482
GK K R IWGKVTR HGNSG VRAKF+SNLPA+A+GHRIRVMLY
Sbjct: 62 --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLY 106
>X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for
ribosomal protein L35a. ).
Length = 110
Score = 149 bits (362), Expect = 5e-36
Identities = 71/107 (66%), Positives = 80/107 (74%)
Frame = +3
Query: 162 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKTVMMQSFYAGKHCVYVYRAKKRTPIPGG 341
GRL++KA+F GYKRGLRNQ E+TALLK+EG FY GK C YVY+AK T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 342 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLY 482
GK K R IWGKVTR HGNSG V AKF+SNLPA+A+GHRIRVMLY
Sbjct: 62 --GKPNKTRVIWGKVTRAHGNSGMVLAKFRSNLPAKAIGHRIRVMLY 106
>AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a
pseudogene 3 protein.
Length = 96
Score = 115 bits (276), Expect = 1e-25
Identities = 57/97 (58%), Positives = 65/97 (67%)
Frame = +3
Query: 162 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKTVMMQSFYAGKHCVYVYRAKKRTPIPGG 341
GRL++K+ F GYKR L+NQ E+TALLK+EG FY GK C VY+AK T IPG
Sbjct: 2 GRLWSKSFFAGYKRSLQNQREHTALLKIEGGYAQDETEFYLGKRCACVYKAKSNTMIPG- 60
Query: 342 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQA 452
K K R IWGKVTR H NSG V AKF SNLPA+A
Sbjct: 61 --SKPNKSRVIWGKVTRAHRNSGMVAAKFHSNLPAKA 95
>X94619-1|CAA64325.1| 21|Homo sapiens ribosomal protein L35a
protein.
Length = 21
Score = 38.3 bits (85), Expect = 0.018
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +3
Query: 162 GRLYAKAVFTGYKRGLRNQ 218
GRL++KA+F GYKRGLRNQ
Sbjct: 3 GRLWSKAIFAGYKRGLRNQ 21
>M74088-1|AAA03586.1| 2843|Homo sapiens APC protein.
Length = 2843
Score = 31.9 bits (69), Expect = 1.6
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 348 GKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYLPGSKN 500
GKK I GKV SG ++ ++N+P+ + G R M+++PG +N
Sbjct: 2191 GKKVYKSLITGKVRSNSEISGQMKQPLQANMPSISRG---RTMIHIPGVRN 2238
>M73548-2|AAA60354.1| 2743|Homo sapiens polyposis locus-encoded
protein protein.
Length = 2743
Score = 31.9 bits (69), Expect = 1.6
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 348 GKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYLPGSKN 500
GKK I GKV SG ++ ++N+P+ + G R M+++PG +N
Sbjct: 2091 GKKVYKSLITGKVRSNSEISGQMKQPLQANMPSISRG---RTMIHIPGVRN 2138
>M73548-1|AAA60353.1| 2844|Homo sapiens polyposis locus-encoded
protein protein.
Length = 2844
Score = 31.9 bits (69), Expect = 1.6
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 348 GKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYLPGSKN 500
GKK I GKV SG ++ ++N+P+ + G R M+++PG +N
Sbjct: 2192 GKKVYKSLITGKVRSNSEISGQMKQPLQANMPSISRG---RTMIHIPGVRN 2239
>AB210001-1|BAE06083.1| 2845|Homo sapiens APC variant protein protein.
Length = 2845
Score = 31.9 bits (69), Expect = 1.6
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 348 GKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYLPGSKN 500
GKK I GKV SG ++ ++N+P+ + G R M+++PG +N
Sbjct: 2193 GKKVYKSLITGKVRSNSEISGQMKQPLQANMPSISRG---RTMIHIPGVRN 2240
>AK126039-1|BAC86408.1| 214|Homo sapiens protein ( Homo sapiens
cDNA FLJ44051 fis, clone TESTI4033433. ).
Length = 214
Score = 30.3 bits (65), Expect = 4.7
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2
Query: 414 HCQSCHVGGSPCPR*HAAWFFCHGDLRELVSSS*LCTHRRNACQ 283
HC C GG P P+ H AW + S + HRR+ CQ
Sbjct: 136 HCSHCP-GGQPGPQLHRAWTVWSWAVPSSASRACGDGHRRSTCQ 178
>X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein.
Length = 1618
Score = 29.9 bits (64), Expect = 6.3
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 389 GHLAPDSTQLGFF-ATGTSGNWCPLLSSVH 303
G PDST LGF+ + TS W PL S H
Sbjct: 1291 GETLPDSTPLGFYLRSPTSPRWTPLESRGH 1320
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,636,973
Number of Sequences: 237096
Number of extensions: 1862011
Number of successful extensions: 7885
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7878
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5533942988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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