Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0343.Seq
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...   137   6e-33
AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical...    30   1.3  
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical...    30   1.3  
U61954-6|AAK29811.2|  459|Caenorhabditis elegans Sand endocytosi...    29   3.0  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score =  137 bits (331), Expect = 6e-33
 Identities = 66/117 (56%), Positives = 82/117 (70%)
 Frame = +3

Query: 132 VLRKASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKTVMMQSFYAGKHCVYVYR 311
           V R+ S P  GRLY KA+FTG+KRGLR Q E+T+LLK+EG        FYAGK  VY+Y+
Sbjct: 6   VARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYK 65

Query: 312 AKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLY 482
           A  +T   G      T+ RAIWGK+TRPHGN+G+VRAKF  N+P  A+G RIRV+LY
Sbjct: 66  AHNKTLKTG--HTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLY 120


>AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9b protein.
          Length = 908

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 434 RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 279
           ++ L   T   + W GHLA ++ Q+   A  +  NW  ++ +    DA+LA +
Sbjct: 839 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 891


>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
            protein Y110A7A.9a protein.
          Length = 1019

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 434  RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 279
            ++ L   T   + W GHLA ++ Q+   A  +  NW  ++ +    DA+LA +
Sbjct: 950  KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 1002


>U61954-6|AAK29811.2|  459|Caenorhabditis elegans Sand endocytosis
           protein familyprotein 1 protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = -3

Query: 395 WAGHLAPDSTQLGFFATGTSGNWCPLLSSVHIDAMLASIKRLHHYGL 255
           W     P     GFF    S  WC     + +  +L S+KR H  GL
Sbjct: 261 WVPICLPRFNDTGFFYAYISYPWCNKEQDIPVCIVLLSVKRDHFDGL 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,493,055
Number of Sequences: 27780
Number of extensions: 242286
Number of successful extensions: 543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)