Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0343.Seq
(556 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si... 109 9e-25
At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si... 107 5e-24
At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id... 105 1e-23
At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri... 105 2e-23
At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3... 30 0.90
At3g28010.1 68416.m03497 hypothetical protein contains Pfam prof... 29 1.6
At3g13870.2 68416.m01752 root hair defective 3 (RHD3) identical ... 29 2.1
At3g13870.1 68416.m01753 root hair defective 3 (RHD3) identical ... 29 2.1
At1g72960.1 68414.m08438 root hair defective 3 GTP-binding (RHD3... 29 2.1
At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family prot... 28 4.8
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 27 6.4
At5g51195.1 68418.m06348 hypothetical protein 27 8.4
At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family pro... 27 8.4
At1g25375.1 68414.m03149 metallo-beta-lactamase family protein 27 8.4
>At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA)
similar to ribosomal protein L35a GI:57118 from [Rattus
norvegicus]
Length = 112
Score = 109 bits (263), Expect = 9e-25
Identities = 53/106 (50%), Positives = 67/106 (63%)
Frame = +3
Query: 165 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKTVMMQSFYAGKHCVYVYRAKKRTPIPGGP 344
RLY + GYKR NQ+ NT+L++VEG T S+Y GK Y+Y+AK +
Sbjct: 11 RLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKK------ 64
Query: 345 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLY 482
+ R IWGKVTRPHGNSG VRAKF SNLP ++MG R+RV +Y
Sbjct: 65 --NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMY 108
>At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC)
similar to ribosomal protein L33B GB:NP_014877 from
[Saccharomyces cerevisiae]
Length = 112
Score = 107 bits (257), Expect = 5e-24
Identities = 51/106 (48%), Positives = 67/106 (63%)
Frame = +3
Query: 165 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKTVMMQSFYAGKHCVYVYRAKKRTPIPGGP 344
RLY + GYKR NQ+ NT+L+++EG T ++Y GK Y+Y+AK +
Sbjct: 11 RLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKK------ 64
Query: 345 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLY 482
+ R IWGKVTRPHGNSG VRAKF SNLP ++MG R+RV +Y
Sbjct: 65 --NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMY 108
>At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB)
identical to GB:CAB81600 from [Arabidopsis thaliana]
Length = 111
Score = 105 bits (253), Expect = 1e-23
Identities = 50/106 (47%), Positives = 67/106 (63%)
Frame = +3
Query: 165 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKTVMMQSFYAGKHCVYVYRAKKRTPIPGGP 344
RLY + GYKR NQ+ NT+L+++EG T ++Y GK Y+Y+AK +
Sbjct: 10 RLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKK------ 63
Query: 345 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLY 482
+ R IWGKVTRPHGNSG VR+KF SNLP ++MG R+RV +Y
Sbjct: 64 --NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMY 107
>At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD)
ribosomal protein L35a.e.c15, Saccharomyces cerevisiae,
PIR:S44069
Length = 111
Score = 105 bits (252), Expect = 2e-23
Identities = 50/106 (47%), Positives = 67/106 (63%)
Frame = +3
Query: 165 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKTVMMQSFYAGKHCVYVYRAKKRTPIPGGP 344
RLY + GYKR NQ+ NT+L+++EG T ++Y GK Y+Y+AK +
Sbjct: 10 RLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKK------ 63
Query: 345 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLY 482
+ R IWGKVTRPHGNSG VR+KF SNLP ++MG R+RV +Y
Sbjct: 64 --NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMY 107
>At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3)
family protein contains Pfam profile: PF05879 root hair
defective 3 GTP-binding protein (RHD3) family
Length = 834
Score = 30.3 bits (65), Expect = 0.90
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +3
Query: 210 RNQHENTALLKVEGAKTVMMQSFYAGKHCV-YVYRAKKRTPIPGGPRGKKTKLRAIWGKV 386
R Q N LLK VM++ F K + +V R K +TPI R + ++ IW V
Sbjct: 139 REQAANKPLLKT--VFQVMLRLFSPRKTTLLFVIRDKTKTPIELLERALREDIQKIWDSV 196
Query: 387 TRPHGNSGSVRAKF 428
+P + + +F
Sbjct: 197 RKPEAHKNTPLNEF 210
>At3g28010.1 68416.m03497 hypothetical protein contains Pfam profile
PF03778: Protein of unknown function (DUF321)
Length = 261
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +3
Query: 204 GLRNQHENTALLKVEGAKTVMMQSFYAGKHCVYVYRAKKRTPIPGG 341
GLR EN + G V F AGK VYV K R + GG
Sbjct: 89 GLRFWRENHGFTFLAGKSQVYRFKFLAGKLRVYVSAGKSRVNVFGG 134
>At3g13870.2 68416.m01752 root hair defective 3 (RHD3) identical to
root hair defective 3 (RHD3) GI:1839188 from
[Arabidopsis thaliana] (Genes Dev (1997) 11(6), 799-811)
Length = 738
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 210 RNQHENTALLKVEGAKTVMMQSFYAGKHCV-YVYRAKKRTPIPGGPRGKKTKLRAIWGKV 386
R Q N LLK VMM+ F K + +V R K RTP+ + ++ IW V
Sbjct: 72 REQAANKPLLKT--VFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 129
Query: 387 TRPHGNSGSVRAKF 428
+P + + + F
Sbjct: 130 PKPQAHKETPLSDF 143
>At3g13870.1 68416.m01753 root hair defective 3 (RHD3) identical to
root hair defective 3 (RHD3) GI:1839188 from
[Arabidopsis thaliana] (Genes Dev (1997) 11(6), 799-811)
Length = 802
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 210 RNQHENTALLKVEGAKTVMMQSFYAGKHCV-YVYRAKKRTPIPGGPRGKKTKLRAIWGKV 386
R Q N LLK VMM+ F K + +V R K RTP+ + ++ IW V
Sbjct: 136 REQAANKPLLKT--VFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 193
Query: 387 TRPHGNSGSVRAKF 428
+P + + + F
Sbjct: 194 PKPQAHKETPLSDF 207
>At1g72960.1 68414.m08438 root hair defective 3 GTP-binding (RHD3)
family protein contains Pfam profile: PF05879 root hair
defective 3 GTP-binding protein (RHD3)
Length = 748
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 210 RNQHENTALLKVEGAKTVMMQSFYAGKHCV-YVYRAKKRTPIPGGPRGKKTKLRAIWGKV 386
R Q N LLK VMM+ F K + +V R K RTP+ + ++ IW V
Sbjct: 94 REQAANKPLLKT--VFQVMMRLFSPRKTTMLFVIRDKTRTPLENLEPVLREDIQKIWDSV 151
Query: 387 TRPHGNSGSVRAKF 428
+P + + + F
Sbjct: 152 PKPEAHKETPLSDF 165
>At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family protein
similar to early nodulin ENOD8 [Medicago sativa]
GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
carota] GI:1911765, lanatoside 15'-O-acetylesterase
[Digitalis lanata] GI:3688284; contains InterPro Entry
IPR001087 Lipolytic enzyme, G-D-S-L family
Length = 379
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -3
Query: 419 SDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSVHIDAMLASIKR 273
SDT ++ G L S ++ FF + TSG +C + +D ++ +I R
Sbjct: 45 SDTGELSSGLGFLPQPSYEITFFRSPTSGRFCN--GRLIVDFLMEAIDR 91
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 27.5 bits (58), Expect = 6.4
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -3
Query: 476 HHSYSVS-HSLGREVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSS 309
H S +S +LGRE L +G D G + P+ST+L + A+ ++ C ++S
Sbjct: 304 HQSELLSIDALGRERVLSVGRDRTMQLYKVGIVVPESTRLIYRASESNFECCCFVNS 360
>At5g51195.1 68418.m06348 hypothetical protein
Length = 267
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 440 EVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWC 324
E++ E+ S+ W D T FFA+ SG WC
Sbjct: 209 EIQAEMESEDVAATFWID----DETHDDFFASSKSGWWC 243
>At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family
protein contains Pfam domain, PF05183: RNA dependent RNA
polymerase
Length = 927
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = -3
Query: 497 LRSWK---IQHHSYSVSHSLGR-EVRLELGSDTARVAMWAGHLAPDSTQ--LGFFATGT 339
+R WK + + +V LG+ E R++L SD+ + + H+APD + G+F T
Sbjct: 178 IRQWKDLPMVAYERAVWFKLGQNEERMQLESDSGKTHYYQCHVAPDGSYRLKGYFLENT 236
>At1g25375.1 68414.m03149 metallo-beta-lactamase family protein
Length = 524
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +3
Query: 153 PRHGR--LYAKAVFTGYKRGLRNQHENTALLKVEGAKTV 263
P HGR L+ K + GY + R++ ++ V+GA+T+
Sbjct: 386 PMHGRVNLWPKHMLCGYLKNRRSREKSILKATVDGAQTL 424
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,111,857
Number of Sequences: 28952
Number of extensions: 231355
Number of successful extensions: 599
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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