Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0341.Seq
         (540 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0P948 Cluster: Putative 5-formyltetrahydrofolate cyclo...    34   1.8  
UniRef50_A5DK67 Cluster: Putative uncharacterized protein; n=1; ...    34   1.8  
UniRef50_A6YHJ4 Cluster: ATP synthase A chain; n=2; Hexasteropho...    34   2.4  
UniRef50_Q74HG2 Cluster: Putative uncharacterized protein; n=2; ...    32   7.3  
UniRef50_Q6BZZ1 Cluster: Autophagy-related protein 12; n=1; Yarr...    32   7.3  

>UniRef50_Q0P948 Cluster: Putative 5-formyltetrahydrofolate
           cyclo-ligase family protein; n=5; Campylobacter|Rep:
           Putative 5-formyltetrahydrofolate cyclo-ligase family
           protein - Campylobacter jejuni
          Length = 208

 Score = 34.3 bits (75), Expect = 1.8
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +3

Query: 249 KLLSWYLRLAAYVSGRVLLVILPLTHSCNQIICNLLILSNAKFAVKFAMDKSYEKLKLEL 428
           K+    L++      + +L+ +PL +  N I    ++  N K  V F  DKS + +KL L
Sbjct: 27  KIFKECLKIIKLFKAKNILIFIPLHYEPNLIKFRHILNKNYKLFVPFMQDKSLKIVKLRL 86

Query: 429 NIIRK 443
             I+K
Sbjct: 87  PFIKK 91


>UniRef50_A5DK67 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 4897

 Score = 34.3 bits (75), Expect = 1.8
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = +3

Query: 222 WSYFRFDMLKLLSWYLRLAAYVSGRVLLVILPLTHSCN--QIICNLLILSNAKFAVKFAM 395
           + YF F   K L+ ++ L   VS   + + +  +  C+   ++C  LI  ++   +K   
Sbjct: 224 FKYFHFLEAKRLNRFMNLPEKVSSSTICIEIQESEFCSLVHLVCGRLIPKHSISDMKSTT 283

Query: 396 DKSYEKLKLELNIIRKV 446
           D S+   K  LN+IR V
Sbjct: 284 DTSFVPTKEALNVIRNV 300


>UniRef50_A6YHJ4 Cluster: ATP synthase A chain; n=2;
           Hexasterophora|Rep: ATP synthase A chain - Iphiteon
           panicea
          Length = 243

 Score = 33.9 bits (74), Expect = 2.4
 Identities = 23/102 (22%), Positives = 53/102 (51%)
 Frame = +3

Query: 84  VVLTLTFVEMFLVQVNKLNSKNSPIWNIRSCRDTDL*LPPFIVVLPWSYFRFDMLKLLSW 263
           + ++L+   +    ++ + +  +  ++I +  +T L L PF++V+  + +   + +++S 
Sbjct: 113 ITISLSLTIIIKTSISAIITHKNKFFSIFTPHNTPLPLAPFLIVIESTSY---ITRIISL 169

Query: 264 YLRLAAYVSGRVLLVILPLTHSCNQIICNLLILSNAKFAVKF 389
            +RLAA +S   LL+ +    + N I+ N  ILS     + F
Sbjct: 170 GVRLAANISAGHLLLTILSKFTLNIILTNHYILSIIPIIILF 211


>UniRef50_Q74HG2 Cluster: Putative uncharacterized protein; n=2;
           Lactobacillus|Rep: Putative uncharacterized protein -
           Lactobacillus johnsonii
          Length = 96

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
 Frame = +3

Query: 243 MLKLLSWYLRLAAY---VSGRVLLVILPLTHSCNQIICNLLILSNAKFAVKFAMDKSYEK 413
           M+K +S+++RLA +   +SG  +LV+   TH+   +I  + I+  + +A+  A DK +  
Sbjct: 1   MIKKISFWVRLAGWSGLISGSSVLVLYQYTHNIMFLINLITIILFSAYALATANDKRWTN 60

Query: 414 LKLELNII 437
               L +I
Sbjct: 61  TDWLLRVI 68


>UniRef50_Q6BZZ1 Cluster: Autophagy-related protein 12; n=1;
           Yarrowia lipolytica|Rep: Autophagy-related protein 12 -
           Yarrowia lipolytica (Candida lipolytica)
          Length = 205

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 24/85 (28%), Positives = 42/85 (49%)
 Frame = -3

Query: 298 TLPET*AASLKYQESNLSISNRKYDHGKTTIKGGNYKSVSLQERIFQIGEFLEFNLFTCT 119
           +LP   AA L+     L  SN K       I G    + SL++ +++I E  +F +    
Sbjct: 95  SLPSDTAALLETFSQQLQQSNVKCQLKFRPIGGA---TPSLKQSVYKIAETQQFGVVV-- 149

Query: 118 RNISTNVKVKTTKCSLPFCYIKAFS 44
           + +   +K+K ++ S  FCYI +F+
Sbjct: 150 KFLRKQLKIKNSQSSQIFCYISSFA 174


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 488,891,296
Number of Sequences: 1657284
Number of extensions: 9198684
Number of successful extensions: 18767
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18764
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)