Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0341.Seq
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.3  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   3.1  
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    26   3.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   3.1  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   5.4  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   7.2  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   9.5  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 342 ICNLLILSNAKFAVKFAMDKSYEKLKLELNIIRKV 446
           +C+   +++ KF V F+    Y  LKL   +IRK+
Sbjct: 44  MCSKFSMNSLKFCVLFSFKTVYSLLKLIKTLIRKL 78


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +3

Query: 333 NQIICNLLILSNAKFAVKFAMDKSYEKLKLELNIIRKV 446
           +++   L +L+N+K  +K      Y+K+K E+ I++ +
Sbjct: 55  SEVFEGLNVLNNSKCIIKVLKPVKYKKIKREIKILQNL 92


>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 127 TCTRNISTNVKVKTTKCSLPFCYIKAFSFN 38
           TC+    + +K K  KCS P+C +  +  +
Sbjct: 3   TCSICNESEIKYKCPKCSFPYCSLPCWKIH 32


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +2

Query: 50  CLYVAKRQATFC--CFNFNICRD 112
           CL + +  +  C  CF+F++CRD
Sbjct: 65  CLKIIRNDSFHCTKCFDFDVCRD 87


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 272 TCSLCFRKGVVSYSTPNT 325
           +C LC  KGV S STP++
Sbjct: 563 SCPLCRTKGVASASTPSS 580


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 127 TCTRNISTNVKVKTTKCSLPFCYIKAFSFN 38
           T +R+IS +++ ++   SLP    K++S+N
Sbjct: 148 TLSRSISLHLRSESAPISLPIHLYKSYSYN 177


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/65 (18%), Positives = 30/65 (46%)
 Frame = -3

Query: 322 VRGRITNNTLPET*AASLKYQESNLSISNRKYDHGKTTIKGGNYKSVSLQERIFQIGEFL 143
           + G + +N   +T   S +   S+ S+++  Y H +++    NY+     E   +  E  
Sbjct: 146 INGELKSNDSQDTAFQSSRNMPSDTSVASPDYSHSQSSSPIANYQESGNSEEPHKAEEQQ 205

Query: 142 EFNLF 128
           + +++
Sbjct: 206 QLSIY 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,270
Number of Sequences: 5004
Number of extensions: 43213
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)