Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0341.Seq
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 33 0.19
11_01_0433 - 3323372-3324616,3324708-3324905 31 0.44
01_06_1391 + 36992276-36992476,36992609-36992794,36993215-369933... 30 1.0
03_02_0338 + 7614199-7614450,7614518-7614703,7614815-7614927,761... 29 1.8
09_06_0113 + 20938357-20938730,20938820-20939057,20939140-209392... 29 3.1
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283... 28 5.5
02_03_0112 - 15363764-15364060,15364227-15364339,15364376-153644... 28 5.5
01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,530... 27 7.2
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220... 27 9.6
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 126 VNKLNSKNSPIWNIRSCRDTDL*LPPFIVVLPWSYFRFDMLKLLSWYLRLAAYVSGRV 299
+N K + + +C T + +P F WS+ M +WYL +AA V G+V
Sbjct: 163 INDRLDKRTWTYIFGACCSTTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAAAVHGQV 220
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 126 VNKLNSKNSPIWNIRSCRDTDL*LPPFIVVLPWSYFRFDMLKLLSWYLRLAAYVSGRV 299
+N K + + +C T + +P F WS+ M +WYL +AA V G+V
Sbjct: 171 INDRLDKRTWTYIFGACCATTVFVPSFHNYRVWSFLGLLMTSYTAWYLTVAAVVHGKV 228
>01_06_1391 +
36992276-36992476,36992609-36992794,36993215-36993327,
36993504-36993687,36993799-36993900
Length = 261
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 126 VNKLNSKNSPIWNIRSCRDTDL*LPPFIVVLPWSYFRFDMLKLLSWYLRLAAYVSGR 296
+N K + + +C T + +P F WS+ M +WYL +AA ++G+
Sbjct: 172 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALLNGQ 228
>03_02_0338 +
7614199-7614450,7614518-7614703,7614815-7614927,
7615023-7615206,7615343-7615440,7616113-7616578,
7617342-7617683
Length = 546
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 126 VNKLNSKNSPIWNIRSCRDTDL*LPPFIVVLPWSYFRFDMLKLLSWYLRLAAYVSGRV 299
+N K + + +C T + +P F WS+ M +WYL +A+ + G+V
Sbjct: 189 INDKLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLVMTTYTAWYLAVASLIHGQV 246
>09_06_0113 +
20938357-20938730,20938820-20939057,20939140-20939264,
20939682-20939715,20939804-20939850,20939948-20940079,
20940420-20940484,20940613-20940685,20940790-20940946
Length = 414
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 265 YQESNLSISNRKYDHGKTTIKGGNYKSVS 179
Y + + S S++KY G+ +KGGN+K S
Sbjct: 251 YCKFHSSKSSQKYSTGRVELKGGNFKFAS 279
>10_01_0267 -
2828966-2829340,2831164-2831629,2833390-2833487,
2833782-2834078,2834287-2834694
Length = 547
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 171 SCRDTDL*LPPFIVVLPWSYFRFDMLKLLSWYLRLAAYVSGRV 299
+C T + +P F WS+ M +WY+ +A+ + G+V
Sbjct: 194 ACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYIAVASLIHGQV 236
>02_03_0112 -
15363764-15364060,15364227-15364339,15364376-15364478,
15365174-15365218
Length = 185
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 271 LKYQESNLSISNRKYDHGKTTIKGGNYKSVSLQERIFQIGEFLEF 137
+ Y++ +L I D + GN + + L ERIF + +EF
Sbjct: 112 MAYEKIHLLIEESWKDFNGEWLDSGNTQPIQLMERIFNLTRTMEF 156
>01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,
5309110-5309356,5309694-5309839,5312482-5312707,
5313652-5313874,5314054-5314202,5315345-5315514,
5316064-5316135,5317610-5317741,5317813-5317900,
5319440-5319656,5320123-5320306,5320644-5320727,
5321148-5321242,5321519-5321562,5321707-5322367,
5323053-5323356
Length = 1218
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 285 VSGRVLLVILPLTHSCNQIICNLLILSNAKFAVKF 389
V+GR L + + N ++C+L +L N +F K+
Sbjct: 1182 VAGRALCHFYTVKNEGNAVVCSLQLLRNFRFTKKY 1216
>04_03_0153 + 11919769-11919880,11920190-11920488,11921909-11922024,
11922113-11922248,11922959-11923006,11924130-11924228,
11924317-11924385,11924465-11924599,11924687-11924755,
11925221-11925276,11925465-11925624,11926534-11926698,
11927484-11927568,11927646-11927849,11928396-11928487,
11928571-11928613,11930727-11930884,11931520-11931630,
11931947-11932012,11933716-11933784,11934181-11934255,
11934330-11934506,11934598-11934683,11936259-11936313,
11936901-11936939,11938105-11938230,11938319-11938432,
11939208-11939265,11939485-11939623,11939698-11939783,
11939842-11940041
Length = 1148
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 39 LKENAFM*QKGKLHFVVLTLTFVEMFLVQVNKLNSKNSPIWNIR 170
++ +A + Q GK+HF+ L + L++V+ L + +P I+
Sbjct: 884 IEASATIYQDGKVHFLELWVVSPPPILIEVDSLQGETNPYLQIK 927
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,692,193
Number of Sequences: 37544
Number of extensions: 236945
Number of successful extensions: 431
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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