Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0341.Seq
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26858| Best HMM Match : ANF_receptor (HMM E-Value=2.4e-15)          31   0.60 
SB_21585| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_5140| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_30634| Best HMM Match : Apolipoprotein (HMM E-Value=0.16)           27   9.8  
SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)                     27   9.8  
SB_5425| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  

>SB_26858| Best HMM Match : ANF_receptor (HMM E-Value=2.4e-15)
          Length = 846

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 297 VLLVILPLTHSCNQIICNLLILSNAKFAVKFAMDKSYEKL 416
           V+ +I P TH+C  I CNLL +  +   V F    S +++
Sbjct: 60  VIAIIGPTTHACAMIACNLLDVQQSPALVGFIRQYSIDQV 99


>SB_21585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = -3

Query: 259 ESNLSISNRKYDHGKTTIKGGNYKS---VSLQERIFQIGEFLEFNLFTCTRNISTNVKVK 89
           ES    S+R +    T +KG   +S   V L   +++  + LE  LFT   N+    K K
Sbjct: 129 ESGWDFSSRWFGKNSTDLKGTMTQSKVPVDLNAVLYRNEKTLE-RLFTKAGNLVKAEKYK 187

Query: 88  TTKCSLPFCYIKAFSFNTGKGGW*DWDV 5
                        F +N GKG W D+D+
Sbjct: 188 ELAKKRAHAMEMVF-WNEGKGSWLDFDL 214


>SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 310 ITNNTLPET*AASLKYQESNLSISNRKYDHGKTTIKGGNYKSVSLQER 167
           + N TLP+  + SL+YQ    S S+ + DH       G  +SV + E+
Sbjct: 420 LRNRTLPQPLSMSLRYQIDESSYSDPESDHPSLVPLIGLAQSVPVMEK 467


>SB_5140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/75 (22%), Positives = 31/75 (41%)
 Frame = -3

Query: 304 NNTLPET*AASLKYQESNLSISNRKYDHGKTTIKGGNYKSVSLQERIFQIGEFLEFNLFT 125
           N  +PE+      +QE N+   +   D  +T I+  N  S   +    Q+    +    +
Sbjct: 68  NEVIPESANVERDFQEPNIKQESSTNDFQETNIEQANSTSDFQESNFEQVNSTSDIQKSS 127

Query: 124 CTRNISTNVKVKTTK 80
            + N+ T  K  +TK
Sbjct: 128 KSTNVITEFKEPSTK 142


>SB_30634| Best HMM Match : Apolipoprotein (HMM E-Value=0.16)
          Length = 558

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -3

Query: 325 CVRGRITNNTLPET*AASLKYQESN--LSISNRKYDHGKTTIKGGNYK 188
           CV G +T   L     A+ KY+ +N    ++N KY    T  K  N K
Sbjct: 363 CVSGHVTGKPLGSPLIANTKYKLANAKYKLANTKYKLANTKYKLANTK 410


>SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)
          Length = 1105

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 357 ILSNAKFAVKFAMDKSYEKLKLELNIIRKVRIPHEV 464
           ++ N +     A  +  +KL +  N+IR++RIP E+
Sbjct: 720 VIKNVELVENAAQMEQAKKLTVPDNLIREIRIPDEI 755


>SB_5425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 436

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -3

Query: 277 ASLKYQESNLSISNRKYDHGKTTIKGGN--YKSVSLQERIFQIGEF 146
           A+ KY+ +   ++N KY H K   K  N  YK    + ++  I ++
Sbjct: 327 ANAKYKLAKYKLANAKYKHAKAKYKLANAKYKLAKAKYKLLAIAKY 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,183,383
Number of Sequences: 59808
Number of extensions: 298524
Number of successful extensions: 504
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)