Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0341.Seq
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-3|CAB16508.1|  482|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U88184-10|AAK31514.2|  728|Caenorhabditis elegans Hypothetical p...    27   6.5  
U88184-9|ABC71833.1|  843|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AL117207-20|CAB60403.3|  228|Caenorhabditis elegans Hypothetical...    27   6.5  

>Z99281-3|CAB16508.1|  482|Caenorhabditis elegans Hypothetical
           protein Y57G11C.6 protein.
          Length = 482

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 270 RLAAYVSGRVL-LVILPLTHSC-NQIICNLLILSNAK 374
           R   YVS  V    I  L H C N IICN+ ++SN K
Sbjct: 302 RKVEYVSDDVFRFSIEVLPHGCSNSIICNVTVISNWK 338


>Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical
           protein T21B10.4 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = -1

Query: 162 SK*VNFWNLTYSLVPETSLQMLKLKQQNVACLFAT*RHFLLI 37
           SK V+F +   SLVPETS   LKL ++ ++ LF +  H L +
Sbjct: 118 SKTVSFVDKKKSLVPETS--ALKLNKKILSTLFDSTSHMLYV 157


>U88184-10|AAK31514.2|  728|Caenorhabditis elegans Hypothetical
           protein F36H5.3a protein.
          Length = 728

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 151 EFLEFNLFTCTRNISTNVKVKTTKCSLPFCYIKA 50
           +FLE NLF    NI T  K+   +C+  FC + +
Sbjct: 473 DFLEINLFCDEENIMTTNKLVEAECT--FCLVSS 504


>U88184-9|ABC71833.1|  843|Caenorhabditis elegans Hypothetical
           protein F36H5.3b protein.
          Length = 843

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 151 EFLEFNLFTCTRNISTNVKVKTTKCSLPFCYIKA 50
           +FLE NLF    NI T  K+   +C+  FC + +
Sbjct: 473 DFLEINLFCDEENIMTTNKLVEAECT--FCLVSS 504


>AL117207-20|CAB60403.3|  228|Caenorhabditis elegans Hypothetical
           protein Y60A3A.19a protein.
          Length = 228

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 114 FLVQVNKLNSKNSPIWNIRSCRDTDL*LPPFIVVLPWSYFRFDMLKLLSWYLRL 275
           +L++VN+ +S   P+        TD+      V+LP  YFR  +  ++SW + +
Sbjct: 74  WLLEVNEEDSDQIPLLEELDIDLTDIYYKIRCVLLPLPYFRMKLNIVVSWIITI 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,625,769
Number of Sequences: 27780
Number of extensions: 235635
Number of successful extensions: 506
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)