Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0341.Seq
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01240.2 68418.m00032 amino acid permease, putative strong si...    30   1.1  
At5g01240.1 68418.m00031 amino acid permease, putative strong si...    30   1.1  
At1g77690.1 68414.m09046 amino acid permease, putative similar t...    29   2.0  
At2g38120.1 68415.m04679 amino acid permease, putative (AUX1) id...    29   2.6  
At2g21050.1 68415.m02499 amino acid permease, putative similar t...    28   3.5  

>At5g01240.2 68418.m00032 amino acid permease, putative strong
           similarity to AUX1 GI:1531758 from [Arabidopsis
           thaliana]; contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 408

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +3

Query: 126 VNKLNSKNSPIWNIRSCRDTDL*LPPFIVVLPWSYFRFDMLKLLSWYLRLAAYVSGR 296
           +N    K +  +   +C  T + +P F     WS+    M    +WYL +A+++ G+
Sbjct: 90  INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIASFLHGQ 146


>At5g01240.1 68418.m00031 amino acid permease, putative strong
           similarity to AUX1 GI:1531758 from [Arabidopsis
           thaliana]; contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 488

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +3

Query: 126 VNKLNSKNSPIWNIRSCRDTDL*LPPFIVVLPWSYFRFDMLKLLSWYLRLAAYVSGR 296
           +N    K +  +   +C  T + +P F     WS+    M    +WYL +A+++ G+
Sbjct: 170 INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIASFLHGQ 226


>At1g77690.1 68414.m09046 amino acid permease, putative similar to
           AUX1 (regulator of root gravitropism, putative permease)
           GI:1531758 GB:CAA67308 from [Arabidopsis thaliana];
           contains Pfam profile PF01490: Transmembrane amino acid
           transporter protein
          Length = 470

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +3

Query: 126 VNKLNSKNSPIWNIRSCRDTDL*LPPFIVVLPWSYFRFDMLKLLSWYLRLAAYVSGR 296
           +N    K +  +   +C  T + +P F     WS+    M    SWYL +A+ + G+
Sbjct: 162 INDKLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLAMTTYTSWYLTIASLLHGQ 218


>At2g38120.1 68415.m04679 amino acid permease, putative (AUX1)
           identical to AUX1 GI:1531758 from [Arabidopsis thaliana]
          Length = 485

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 171 SCRDTDL*LPPFIVVLPWSYFRFDMLKLLSWYLRLAAYVSGR 296
           +C  T + +P F     WS+    M    +WYL +A+ + G+
Sbjct: 179 ACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIASIIHGQ 220


>At2g21050.1 68415.m02499 amino acid permease, putative similar to
           AUX1 [Arabidopsis thaliana] GI:1531758; contains Pfam
           profile PF01490: Transmembrane amino acid transporter
           protein
          Length = 483

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 171 SCRDTDL*LPPFIVVLPWSYFRFDMLKLLSWYLRLAAYVSGRV 299
           +C  T + +P F     WS+    M    +WYL +A+ + G+V
Sbjct: 173 ACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIASILHGQV 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,740,117
Number of Sequences: 28952
Number of extensions: 210164
Number of successful extensions: 419
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)