Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0340.Seq
(770 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 108 2e-22
UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 101 1e-20
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 88 2e-16
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 82 2e-14
UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1; Pl... 80 5e-14
UniRef50_Q4UC11 Cluster: U3 small nucleolar ribonucleoprotein or... 78 2e-13
UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular organ... 69 1e-10
UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: L... 67 4e-10
UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep: Bet... 67 4e-10
UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1; ... 67 5e-10
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 66 7e-10
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 66 1e-09
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 65 2e-09
UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1; Tric... 64 4e-09
UniRef50_Q01688 Cluster: Putative 40S ribosomal protein S4-like;... 62 1e-08
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 62 1e-08
UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; ... 60 6e-08
UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein pr... 54 4e-06
UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2; ... 51 4e-05
UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3; Eukaryo... 50 6e-05
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 46 8e-04
UniRef50_P06219 Cluster: Beta-galactosidase; n=11; Gammaproteoba... 42 0.017
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 42 0.022
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 42 0.022
UniRef50_Q669R9 Cluster: Beta-galactosidase; n=14; Yersinia|Rep:... 41 0.039
UniRef50_A5K435 Cluster: Proteosome subunit alpha type 1, putati... 38 0.28
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 38 0.28
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 36 1.1
UniRef50_Q0SRU3 Cluster: Repeat organellar protein, putative; n=... 36 1.5
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 36 1.5
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 36 1.5
UniRef50_UPI0000499A36 Cluster: DnaJ family protein; n=1; Entamo... 35 1.9
UniRef50_Q0CG04 Cluster: Predicted protein; n=1; Aspergillus ter... 35 1.9
UniRef50_Q7RD43 Cluster: Putative uncharacterized protein PY0558... 35 2.6
UniRef50_A5Z7I9 Cluster: Putative uncharacterized protein; n=6; ... 34 3.4
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 34 3.4
UniRef50_Q9ZK71 Cluster: Putative; n=2; Helicobacter pylori|Rep:... 34 4.5
UniRef50_Q9PRA9 Cluster: Conserved hypothetical; n=1; Ureaplasma... 34 4.5
UniRef50_Q73K15 Cluster: RNA pseudouridylate synthase family pro... 34 4.5
UniRef50_A3N3H1 Cluster: Putative uncharacterized protein; n=2; ... 34 4.5
UniRef50_P05475 Cluster: Uncharacterized killer plasmid pGKl-2 p... 34 4.5
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 34 4.5
UniRef50_Q9U0H9 Cluster: Putative uncharacterized protein PFD054... 33 7.9
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 108 bits (259), Expect = 2e-22
Identities = 49/76 (64%), Positives = 61/76 (80%)
Frame = -1
Query: 254 KIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKM 75
KI ++D + FRTE S LLEKLY +GLIPT+WDL A+ +SASSFCRRRLPV+++RNKM
Sbjct: 60 KIAEVDAKHPFRTEMSGLLLEKLYVLGLIPTKWDLENASKISASSFCRRRLPVVLLRNKM 119
Query: 74 SETIKEATKFIEQGHV 27
SE +K AT+ IE GHV
Sbjct: 120 SENLKHATQMIEHGHV 135
Score = 95.5 bits (227), Expect = 1e-18
Identities = 41/60 (68%), Positives = 52/60 (86%)
Frame = -2
Query: 430 MVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAKR 251
MVRKLKFHE KLLKKVDF +WK NN++E+K+M+++ +QKREDYT YNKLSR+IREL +
Sbjct: 1 MVRKLKFHEQKLLKKVDFFNWKETNNLNEMKIMRRYNVQKREDYTTYNKLSRNIRELTNK 60
>UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC69249 protein -
Strongylocentrotus purpuratus
Length = 145
Score = 101 bits (243), Expect = 1e-20
Identities = 43/76 (56%), Positives = 62/76 (81%)
Frame = -1
Query: 254 KIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKM 75
KIK LD + FR + ++Q+L+KLY +G++PT+ +LAL NVSASSFCRRRLPV+MV+ KM
Sbjct: 16 KIKQLDSKDPFRNQCTSQMLKKLYNMGIVPTKQNLALCDNVSASSFCRRRLPVVMVKIKM 75
Query: 74 SETIKEATKFIEQGHV 27
+ET++ A KF++ GH+
Sbjct: 76 AETVESAVKFVQHGHI 91
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 88.2 bits (209), Expect = 2e-16
Identities = 37/61 (60%), Positives = 56/61 (91%), Gaps = 1/61 (1%)
Frame = -2
Query: 430 MVRKLKFHEGKLLKKVDFISWKL-DNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAK 254
MVRKLKFHE KLLK+VDF++W++ D+N+ E++V++++ +Q+REDYT+YN+LSR +RELA+
Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60
Query: 253 R 251
R
Sbjct: 61 R 61
Score = 87.4 bits (207), Expect = 3e-16
Identities = 37/77 (48%), Positives = 58/77 (75%)
Frame = -1
Query: 257 KKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNK 78
++++DL ++FR +SA LL+KLY +GL+PTR L L V+ASSFCRRRLP ++++ +
Sbjct: 60 RRLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLR 119
Query: 77 MSETIKEATKFIEQGHV 27
M++ ++ A F+EQGHV
Sbjct: 120 MAQHLQAAVAFVEQGHV 136
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 81.8 bits (193), Expect = 2e-14
Identities = 42/92 (45%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Frame = -1
Query: 299 HKV*QIVS*YQRARKKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLA-LATNVSAS 123
HK +I +R K+ L P + FR + LL+KLY +G++ T+ ++ L V+ S
Sbjct: 45 HKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVS 104
Query: 122 SFCRRRLPVLMVRNKMSETIKEATKFIEQGHV 27
+ CRRRLPV+M R KM+ETI++A KFIEQGHV
Sbjct: 105 AICRRRLPVIMHRLKMAETIQDAVKFIEQGHV 136
Score = 77.4 bits (182), Expect = 4e-13
Identities = 35/60 (58%), Positives = 43/60 (71%)
Frame = -2
Query: 430 MVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAKR 251
MVRKLK HE KLLKKVDF+ WK D + +VM+ + IQ REDY KYN++ DIR LA +
Sbjct: 1 MVRKLKHHEQKLLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANK 60
>UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribosomal protein S4,
putative - Plasmodium falciparum (isolate 3D7)
Length = 159
Score = 80.2 bits (189), Expect = 5e-14
Identities = 35/59 (59%), Positives = 45/59 (76%)
Frame = -2
Query: 427 VRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAKR 251
+RKLK+HE KLLKKV+F WK NN+ EVKV++K+ IQ REDYTKYNK+ I +L +
Sbjct: 1 MRKLKYHEQKLLKKVNFYDWKRTNNVREVKVLRKYVIQNREDYTKYNKICGYITKLVSK 59
Score = 44.0 bits (99), Expect = 0.004
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = -1
Query: 182 QIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHV 27
++ L+P + ++ SSFCRRRL VL+ R K +TIK A +I+ G++
Sbjct: 59 KLRLLPENDEFPECEKITVSSFCRRRLAVLLFRLKFVQTIKLAITYIQHGNI 110
>UniRef50_Q4UC11 Cluster: U3 small nucleolar ribonucleoprotein or
40S ribosomal protein S4-like, putative; n=9;
Eukaryota|Rep: U3 small nucleolar ribonucleoprotein or
40S ribosomal protein S4-like, putative - Theileria
annulata
Length = 189
Score = 78.2 bits (184), Expect = 2e-13
Identities = 39/105 (37%), Positives = 63/105 (60%)
Frame = -1
Query: 329 KVLYTKA*GLHKV*QIVS*YQRARKKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDL 150
K + K HK ++V + +++ L ++ FR + + LLEKLYQ+GLI T+ +L
Sbjct: 34 KYMIQKPEDYHKYNKLVGNITKLTNELRKLPEDDAFRIKMTDDLLEKLYQMGLISTKGNL 93
Query: 149 ALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVEWDL 15
+ +SAS FCRRRL V++V K + + +A FIEQGH+ + +
Sbjct: 94 EICERLSASVFCRRRLAVVLVTRKFCQHLTQAITFIEQGHLMYGI 138
Score = 66.5 bits (155), Expect = 7e-10
Identities = 31/56 (55%), Positives = 39/56 (69%)
Frame = -2
Query: 427 VRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIREL 260
+RKLK+HE KLLKK +F WK N E K++ K+ IQK EDY KYNKL +I +L
Sbjct: 1 MRKLKYHEQKLLKKTNFFDWKNVNARRETKIINKYMIQKPEDYHKYNKLVGNITKL 56
>UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular
organisms|Rep: LacZ-alpha peptide - Escherichia coli
Length = 90
Score = 68.9 bits (161), Expect = 1e-10
Identities = 31/40 (77%), Positives = 33/40 (82%)
Frame = +2
Query: 578 ENLGVTQLNRLAAHPPFAXWRNSEEGRNDXPFQQLRAELR 697
EN GVTQLNRLAAHPPFA WRNSEE R D P QQLR+ +R
Sbjct: 32 ENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLIR 71
>UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: LacZ
protein - Phage M13mp18
Length = 102
Score = 67.3 bits (157), Expect = 4e-10
Identities = 30/37 (81%), Positives = 31/37 (83%)
Frame = +2
Query: 578 ENLGVTQLNRLAAHPPFAXWRNSEEGRNDXPFQQLRA 688
EN GVTQLNRLAAHPPFA WRNSEE R D P QQLR+
Sbjct: 36 ENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRS 72
>UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep:
Beta-galactosidase - Escherichia coli (strain K12)
Length = 1024
Score = 67.3 bits (157), Expect = 4e-10
Identities = 30/37 (81%), Positives = 31/37 (83%)
Frame = +2
Query: 578 ENLGVTQLNRLAAHPPFAXWRNSEEGRNDXPFQQLRA 688
EN GVTQLNRLAAHPPFA WRNSEE R D P QQLR+
Sbjct: 18 ENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRS 54
>UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1;
Erwinia amylovora|Rep: Putative uncharacterized protein
- Erwinia amylovora (Fire blight bacteria)
Length = 123
Score = 66.9 bits (156), Expect = 5e-10
Identities = 30/36 (83%), Positives = 30/36 (83%)
Frame = +2
Query: 578 ENLGVTQLNRLAAHPPFAXWRNSEEGRNDXPFQQLR 685
EN GVTQLNRLAAHPPFA WRNSEE R D P QQLR
Sbjct: 78 ENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLR 113
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 66.5 bits (155), Expect = 7e-10
Identities = 30/58 (51%), Positives = 41/58 (70%)
Frame = -2
Query: 430 MVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELA 257
MVRKLK HE KLLKK DF+SW++D + +++KF ++KRE Y YN L+ RE+A
Sbjct: 1 MVRKLKTHEQKLLKKTDFMSWQVDQQGKQGDMLRKFYVKKREHYALYNTLAAKSREVA 58
Score = 66.1 bits (154), Expect = 9e-10
Identities = 32/75 (42%), Positives = 47/75 (62%)
Frame = -1
Query: 251 IKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMS 72
IK+L ++ FR++ + +L K Y GL+PT L V+ +SF RRRLPV+M M
Sbjct: 61 IKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGKVTGASFARRRLPVVMRNIGMC 120
Query: 71 ETIKEATKFIEQGHV 27
E++K A+ +EQGHV
Sbjct: 121 ESVKTASDLVEQGHV 135
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 65.7 bits (153), Expect = 1e-09
Identities = 34/79 (43%), Positives = 51/79 (64%)
Frame = -1
Query: 263 ARKKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVR 84
A ++K+ DP RT + +L+ +LY +G+I R L T V+ SSFC RRLP++M R
Sbjct: 59 ALARLKESDP---VRTTITKKLVGRLYSVGVIKNR-KLVDCTKVTVSSFCERRLPMVMKR 114
Query: 83 NKMSETIKEATKFIEQGHV 27
+M + K+AT+F+E GHV
Sbjct: 115 IRMVPSFKDATRFVEHGHV 133
Score = 61.3 bits (142), Expect = 3e-08
Identities = 26/58 (44%), Positives = 42/58 (72%)
Frame = -2
Query: 427 VRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAK 254
+R+LKFHE KLLK+V+F+ WK N E + K+ ++ RE+YTKY+++ +R+LA+
Sbjct: 1 MRELKFHEKKLLKQVNFLEWKNTNTAREHLAIAKYGLRDREEYTKYSRIVGKVRKLAE 58
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 65.3 bits (152), Expect = 2e-09
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 12/103 (11%)
Frame = -1
Query: 299 HKV*QIVS*YQRARKKIKDLDPNNEFRTESSAQLLEKLY------------QIGLIPTRW 156
HK ++V + +++ L ++ FR + + L+EKLY Q+GLI R
Sbjct: 44 HKYNKLVGRITKLVSELRKLPEDDSFRIKMTDNLMEKLYVFKMMYIALSRYQMGLISVRG 103
Query: 155 DLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHV 27
+L L +SAS FCRRRL ++V+ K E +K+A +IEQGH+
Sbjct: 104 NLELCERLSASVFCRRRLATVLVQRKFCEHLKQAVTYIEQGHI 146
Score = 57.2 bits (132), Expect = 4e-07
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = -2
Query: 427 VRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIREL 260
+R+LK+HE KLLKKV+ WK + E K+++++ IQ E+Y KYNKL I +L
Sbjct: 1 MRQLKYHEQKLLKKVNIYDWKRVDTHRETKILRRYYIQDPEEYHKYNKLVGRITKL 56
>UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1;
Trichomonas vaginalis G3|Rep: S4 domain containing
protein - Trichomonas vaginalis G3
Length = 182
Score = 64.1 bits (149), Expect = 4e-09
Identities = 29/91 (31%), Positives = 54/91 (59%)
Frame = -1
Query: 299 HKV*QIVS*YQRARKKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASS 120
H+ ++V QR ++ + P ++ R + + Q ++++Y++G+I T L+ ++ +
Sbjct: 45 HQYNRLVGKIQRFTNTLRQMGPEDKVRIDLTKQFVDRVYKLGIIETP-QLSECEKINVVA 103
Query: 119 FCRRRLPVLMVRNKMSETIKEATKFIEQGHV 27
C+RRLPV+MV K + I EA K + QGHV
Sbjct: 104 ICKRRLPVIMVNLKFCQRISEADKLVRQGHV 134
Score = 55.2 bits (127), Expect = 2e-06
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = -2
Query: 430 MVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKL 281
M RKLK+HE KLLKK + WK +NN+ +V+ +C+ E+Y +YN+L
Sbjct: 1 MGRKLKYHEQKLLKKTNLYHWKGENNLRSGQVVGIYCLDNSEEYHQYNRL 50
>UniRef50_Q01688 Cluster: Putative 40S ribosomal protein S4-like;
n=21; Eukaryota|Rep: Putative 40S ribosomal protein
S4-like - Pneumocystis carinii
Length = 169
Score = 62.5 bits (145), Expect = 1e-08
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = -1
Query: 254 KIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATN-VSASSFCRRRLPVLMVRNK 78
K+ L+P + F LL KL+ + L+ + L+ N ++ S+FCRRRLPV+M R K
Sbjct: 60 KLSLLEPTDSFGNLHKKMLLGKLFDMALLTSTPKLSDVENKLTVSAFCRRRLPVVMCRLK 119
Query: 77 MSETIKEATKFIEQGHV 27
M ET+ + K++E GHV
Sbjct: 120 MCETVSTSVKYVEHGHV 136
Score = 58.0 bits (134), Expect = 2e-07
Identities = 27/50 (54%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Frame = -2
Query: 427 VRKLKFHEGKLLKKVDFISWKL-DNNISEVKVMKKFCIQKREDYTKYNKL 281
+RKLK+HE KLL K DF+++K DNN +V V++++ I +REDY KYN+L
Sbjct: 1 MRKLKYHEKKLLTKHDFLNYKKDDNNHRDVNVIRRYHIPQREDYFKYNQL 50
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 62.1 bits (144), Expect = 1e-08
Identities = 26/58 (44%), Positives = 38/58 (65%)
Frame = -2
Query: 430 MVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELA 257
MVRKLK+HE KLLKKVDF+ W+ D I + +M +F I ++ Y K ++R+L+
Sbjct: 1 MVRKLKYHESKLLKKVDFVDWRRDKGIRKAGIMARFHIHDESEFEAYEKAVLNLRKLS 58
Score = 48.0 bits (109), Expect = 3e-04
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Frame = -1
Query: 251 IKDLDPNNEFRTESSAQLLEKLYQIGLI--PTRWDLALATNVSASSFCRRRLPVLMVRNK 78
++ L ++ FR + ++ ++LY +G+I P + L + + AS FCRRRL +++ K
Sbjct: 61 LQKLPKDDAFRMVLTKRICDRLYDLGVIILPEK-GLHMIDVIHASDFCRRRLAIVVKAKK 119
Query: 77 MSETIKEATKFIEQGHVE 24
M + +A I+QGH++
Sbjct: 120 MVTDVTQAETLIQQGHIK 137
>UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 177
Score = 60.1 bits (139), Expect = 6e-08
Identities = 31/87 (35%), Positives = 51/87 (58%)
Frame = -1
Query: 287 QIVS*YQRARKKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRR 108
++V+ Y+ K+I DL + + + + L EKLY +G+I + L V+ASSFCRR
Sbjct: 50 KLVAQYKHVLKEISDLSDQDPVKQKLLSDLSEKLYNMGVIDLKQPSELV-KVNASSFCRR 108
Query: 107 RLPVLMVRNKMSETIKEATKFIEQGHV 27
R V++V+ K +E + +A + GHV
Sbjct: 109 RAVVMLVKKKFAEHLTQAFGLLSHGHV 135
Score = 45.6 bits (103), Expect = 0.001
Identities = 21/57 (36%), Positives = 37/57 (64%)
Frame = -2
Query: 424 RKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAK 254
RKLK+HE KLLKK +F ++ +N +V+ + +F ++ +E+Y +Y KL + + K
Sbjct: 5 RKLKYHEEKLLKKTNFKHYRRENQ-KDVENIGRFGLKGKEEYAEYTKLVAQYKHVLK 60
>UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3, putative; n=6; Trypanosomatidae|Rep: U3
small nucleolar ribonucleoprotein protein IMP3, putative
- Trypanosoma brucei
Length = 226
Score = 54.0 bits (124), Expect = 4e-06
Identities = 26/75 (34%), Positives = 42/75 (56%)
Frame = -1
Query: 251 IKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMS 72
++ L +++ R + + Q+L+KLY +GLI + LA V FC+RRLP ++ M+
Sbjct: 107 LRYLPADSKIRIQITQQILDKLYAMGLINEKLGLAEVDKVGVEVFCKRRLPTVLRDLNMA 166
Query: 71 ETIKEATKFIEQGHV 27
K A F+ GHV
Sbjct: 167 PNCKIAADFVHHGHV 181
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/55 (43%), Positives = 35/55 (63%)
Frame = -2
Query: 424 RKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIREL 260
R LK+HE KLL+K DF+ + D N E + K+ ++ REDY +Y +L IR+L
Sbjct: 50 RTLKYHEKKLLRKHDFMQYPQD-NWHEPFCITKYHLEDREDYRRYLRLVGLIRQL 103
>UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 157
Score = 50.8 bits (116), Expect = 4e-05
Identities = 21/56 (37%), Positives = 38/56 (67%)
Frame = -2
Query: 427 VRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIREL 260
+RKL+FHE KLLKK +F+ +K + + V +++ + +R+DY KYN + +++L
Sbjct: 1 MRKLRFHEQKLLKKTNFLDFKREKGHRDAIVTQRYLLVERDDYKKYNGICLMVQKL 56
Score = 35.5 bits (78), Expect = 1.5
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = -1
Query: 110 RRLPVLMVRNKMSETIKEATKFIEQGHV 27
RRL +MV+ K +E +KEA +I+QGHV
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHV 109
>UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3;
Eukaryota|Rep: beta-galactosidase - Entamoeba
histolytica HM-1:IMSS
Length = 86
Score = 50.0 bits (114), Expect = 6e-05
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = +3
Query: 576 GKTWALPNLIALQHIPLSPXGVIAKKAAT 662
GKT ALPNLIALQHIPLSP GVI+++A T
Sbjct: 15 GKTLALPNLIALQHIPLSPAGVISEEART 43
Score = 49.2 bits (112), Expect = 1e-04
Identities = 25/48 (52%), Positives = 28/48 (58%)
Frame = +2
Query: 545 HWPSFYNVVTGENLGVTQLNRLAAHPPFAXWRNSEEGRNDXPFQQLRA 688
HWPSFYNVVTG+ L + L L P SEE R D P QQLR+
Sbjct: 5 HWPSFYNVVTGKTLALPNLIALQHIPLSPAGVISEEARTDRPSQQLRS 52
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 46.4 bits (105), Expect = 8e-04
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = -1
Query: 251 IKDLDPNNEFRTESSAQLLEKLYQIGLIPT-RWDLALATNVSASSFCRRRLPVLMVRNKM 75
+ L +N R E + +L LY +G++ + L + +++S+ RRLP +M++ KM
Sbjct: 60 LTQLPQDNNVRIELTRRLSRILYDMGVVDNAQASLDDISKLNSSALLLRRLPCIMMKLKM 119
Query: 74 SETIKEATKFIEQGHV 27
+ I++ +F++QGHV
Sbjct: 120 VQKIQDGVRFVKQGHV 135
Score = 44.0 bits (99), Expect = 0.004
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = -2
Query: 427 VRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAK 254
+R LK+HE KLLKK WK +I + M K+ + R + Y + R IR + +
Sbjct: 1 MRALKYHEEKLLKKTSLYDWKDSYSIIDSATMNKYGVYDRRELITYRQTMRKIRHMVE 58
>UniRef50_P06219 Cluster: Beta-galactosidase; n=11;
Gammaproteobacteria|Rep: Beta-galactosidase - Klebsiella
pneumoniae
Length = 1034
Score = 41.9 bits (94), Expect = 0.017
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 545 HWPSFYNVVTGE---NLGVTQLNRLAAHPPFAXWRNSEEGRNDXPFQQLR 685
H P F+ V+ E N +T LNRL AHP FA WR+ R++ P + R
Sbjct: 10 HTPDFHAVLAREDWHNQTITHLNRLPAHPVFASWRDELAARDNLPSSRRR 59
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 41.5 bits (93), Expect = 0.022
Identities = 18/64 (28%), Positives = 37/64 (57%)
Frame = -1
Query: 218 TESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIE 39
+E + L KL ++G++ +L +++ RRL ++VR +++T+K+A +FI
Sbjct: 66 SEEKERFLTKLKKLGVLSENAELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIV 125
Query: 38 QGHV 27
GH+
Sbjct: 126 HGHI 129
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 41.5 bits (93), Expect = 0.022
Identities = 24/82 (29%), Positives = 40/82 (48%)
Frame = -1
Query: 272 YQRARKKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVL 93
Y+R + I +D + R + +LL+ L + G I L +++ RRRL L
Sbjct: 51 YRRDARIILGMDIDE--RADKEKELLDHLVRAGFISPNAKLEEVLDLNVEDILRRRLQSL 108
Query: 92 MVRNKMSETIKEATKFIEQGHV 27
+ + +S T KEA F+ GH+
Sbjct: 109 VFKRGLSHTAKEARLFVVHGHI 130
>UniRef50_Q669R9 Cluster: Beta-galactosidase; n=14; Yersinia|Rep:
Beta-galactosidase - Yersinia pseudotuberculosis
Length = 1066
Score = 40.7 bits (91), Expect = 0.039
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 578 ENLGVTQLNRLAAHPPFAXWRNSEEGRNDXPFQQ 679
EN +TQ +RL AHPPF WR+ E + D P Q
Sbjct: 25 ENPQITQYHRLEAHPPFHSWRDVESAQKDRPSPQ 58
>UniRef50_A5K435 Cluster: Proteosome subunit alpha type 1, putative;
n=5; Plasmodium|Rep: Proteosome subunit alpha type 1,
putative - Plasmodium vivax
Length = 269
Score = 37.9 bits (84), Expect = 0.28
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -2
Query: 457 YILVLGVPKMVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKF 323
+++V G+ K + KL FH+ KL K D+I + S+ KV+ K+
Sbjct: 43 FVVVCGLKKRISKLSFHQEKLFKIDDYIGVTMSGITSDAKVLTKY 87
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 37.9 bits (84), Expect = 0.28
Identities = 19/97 (19%), Positives = 52/97 (53%)
Frame = -1
Query: 302 LHKV*QIVS*YQRARKKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSAS 123
+H++ ++ S R R ++ L + ++S +++ ++ + G++ L +++ +
Sbjct: 38 MHELWKVQSEISRLRGNVRVLLSGSSSH-DTSDKIIARMVKFGILENGATLEKVLDITPN 96
Query: 122 SFCRRRLPVLMVRNKMSETIKEATKFIEQGHVEWDLK 12
+F RRL ++ + ++ TIK+A + I G + ++K
Sbjct: 97 AFLERRLQTVVFKKGLARTIKQARQLITHGFIAVNMK 133
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 35.9 bits (79), Expect = 1.1
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = -1
Query: 221 RTESSAQLLEKLYQIGLIPT-RWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKF 45
R+ QL++KLY++G+I L ++ ++ RRL ++ + ++ TI +A +
Sbjct: 66 RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQL 125
Query: 44 IEQGHV 27
I GH+
Sbjct: 126 IVHGHI 131
>UniRef50_Q0SRU3 Cluster: Repeat organellar protein, putative; n=3;
Clostridium perfringens|Rep: Repeat organellar protein,
putative - Clostridium perfringens (strain SM101 / Type
A)
Length = 451
Score = 35.5 bits (78), Expect = 1.5
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Frame = -2
Query: 433 KMVRKLKFHEGK---LLKKVDFISWK---LDNNISEVKVMKKFCIQKREDYT-KYNKLSR 275
K + LK EG+ L +K+D I+ + L+ N++E+K K+ + RE+ K+NKL+
Sbjct: 88 KEIEDLKELEGESVSLKEKLDKITSEKEALEKNLNELKDKKEAIEKSREELNNKFNKLNS 147
Query: 274 DIRELAKR*KTSIQIMNSGQSQVLNFWKNFTKL 176
+ L + K + MN+ ++ N K +L
Sbjct: 148 ENSNLKEELKNTKNRMNNSNQEIANLKKEIERL 180
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 35.5 bits (78), Expect = 1.5
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = -1
Query: 269 QRARKKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLAL--ATNVSASSFCRRRLPV 96
++ARK I D E + + QL L + G++ + D L +++ S RRL
Sbjct: 53 RQARKLISDTSAQGE---KEAVQLFGILNRYGIL-LKEDATLDDVLSLNLESILERRLQT 108
Query: 95 LMVRNKMSETIKEATKFIEQGHV 27
L+ R ++ T K+A +FI GH+
Sbjct: 109 LVFRKGLANTPKQARQFIVHGHI 131
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 35.5 bits (78), Expect = 1.5
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = -1
Query: 218 TESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIE 39
T S + + +L +IG++ L ++ + RRL ++ R ++ T+ +A +F+
Sbjct: 64 TVSGEEFVARLQRIGILSEEERLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVS 123
Query: 38 QGHVEWD 18
GHV D
Sbjct: 124 HGHVTVD 130
>UniRef50_UPI0000499A36 Cluster: DnaJ family protein; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: DnaJ family protein -
Entamoeba histolytica HM-1:IMSS
Length = 407
Score = 35.1 bits (77), Expect = 1.9
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Frame = +2
Query: 287 VILCVILTLLYTKLFHNLHFTNIVIQLP*YKVYFL*QFPFMKFKFSDHFGNTEH--KDIG 460
++ C+ + LL KL N ++ + +P +YFL FP+ + S G T H IG
Sbjct: 157 IVFCLWIVLLIVKLELNTEWSFSAVNVPIDILYFL-SFPYYSKRLSKLLGGTGHIINWIG 215
Query: 461 YVVFLLI*KKNSRGGPYPI--RPIVSRITIHW------PSFYNVVTGENLGVTQLNR 607
+++F + K++ Y + P + + W F +T EN Q+ R
Sbjct: 216 FILFFVRVDKDNEDSNYFVWLIPYFIGVVLQWIASIIDDCFSAEITNENGETVQVKR 272
>UniRef50_Q0CG04 Cluster: Predicted protein; n=1; Aspergillus
terreus NIH2624|Rep: Predicted protein - Aspergillus
terreus (strain NIH 2624)
Length = 510
Score = 35.1 bits (77), Expect = 1.9
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Frame = -2
Query: 580 FPSHDVVKRRPVNCNTTHYRANWVRAPPRVFFLYKQKHYITYILVLGVPKMVRKLKFHEG 401
FP D +KR PV + + N++R ++ LY+QK + + + PK +RKL F+
Sbjct: 201 FPEEDAIKRAPVPVSVLYAVLNYLRF-WAIWLLYRQKDLVFHEI---NPK-IRKLDFNNP 255
Query: 400 KLLKKVDFISWKLDNNISEVKVMKKFCIQK-REDYTKYNKL 281
+ K+ + + +L + MKK CIQ R T + L
Sbjct: 256 Q--KEDNLVKTRLHTLRLDAATMKK-CIQACRSHRTSFTSL 293
>UniRef50_Q7RD43 Cluster: Putative uncharacterized protein PY05582;
n=6; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein PY05582 - Plasmodium yoelii yoelii
Length = 1611
Score = 34.7 bits (76), Expect = 2.6
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = -2
Query: 382 DFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAKR*KTSIQIMNSGQS--- 212
D + + + + EV+++ K IQK ++YT N ++ IR L K K I + + ++
Sbjct: 1058 DSLKKEFEKSFDEVQIILKEMIQKEKEYT--NSYNKSIRSLEKEHKHMIDKLLTEKNVAI 1115
Query: 211 QVLNFWKNFTK 179
+ +NF+KN K
Sbjct: 1116 EQINFYKNMCK 1126
>UniRef50_A5Z7I9 Cluster: Putative uncharacterized protein; n=6;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 481
Score = 34.3 bits (75), Expect = 3.4
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Frame = -2
Query: 568 DVVKRRPVNCNTTHYRANWVRAPPRVFFLYKQKHYITYILVLGVPKMVRKLKFHEGKLLK 389
D +K R V N YR+N + PRV +K + + G+ + + + GK+ K
Sbjct: 241 DELKERIVKENLNTYRSNQIVRSPRVRRFKSKK--VRKTRMTGLQRQYFREMYRLGKIRK 298
Query: 388 KVDFISWKLDNNISEVKVM-KKFCIQKREDYTKYNKLSRDIRELAKR 251
+ WK ++ + K++ K++ + D T ++S ++L K+
Sbjct: 299 QPYSQVWKYRKDVKKFKLLQKQYLFLAKYDVTDVEQISDVQKDLRKK 345
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 34.3 bits (75), Expect = 3.4
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = -1
Query: 236 PNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKE 57
P + + +++KL +G++ L + RRL ++ R + +IK+
Sbjct: 68 PEDSHYIRDAQNIVKKLQTLGILKEDAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQ 127
Query: 56 ATKFIEQGHV 27
A +FI GH+
Sbjct: 128 ARQFIVHGHI 137
>UniRef50_Q9ZK71 Cluster: Putative; n=2; Helicobacter pylori|Rep:
Putative - Helicobacter pylori J99 (Campylobacter pylori
J99)
Length = 759
Score = 33.9 bits (74), Expect = 4.5
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Frame = -2
Query: 421 KLKFHEGKLLKKVDFIS--WKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAKR* 248
K+K ++ K++ K +S +KLD+N +E+ +K + E T +N+ +DI + K
Sbjct: 362 KIKANQQKMIDKSKEMSRNFKLDSNKNEIDAIKDLIKKANEQITNHNETIKDIEKQKKSC 421
Query: 247 K--TSIQIMNSGQSQVLNFWKNFTKLD 173
K T ++N +S + + K + L+
Sbjct: 422 KEQTWKFLINEFKSDIQEYNKKYCGLE 448
>UniRef50_Q9PRA9 Cluster: Conserved hypothetical; n=1; Ureaplasma
parvum|Rep: Conserved hypothetical - Ureaplasma parvum
(Ureaplasma urealyticum biotype 1)
Length = 277
Score = 33.9 bits (74), Expect = 4.5
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = -2
Query: 496 RVFFLYKQKHYITYILVLGVP-KMVRKLKFHEGKLLKKVDFISWKL-DNNISEVKVMK 329
++F+ Y +++++ LVL KM LKF++ LLKK+ + K+ D ++ EVK +K
Sbjct: 212 KIFYPYDKENFLIDELVLKKDLKMYNYLKFNKNNLLKKIMILVQKIVDMHLVEVKELK 269
>UniRef50_Q73K15 Cluster: RNA pseudouridylate synthase family
protein; n=1; Treponema denticola|Rep: RNA
pseudouridylate synthase family protein - Treponema
denticola
Length = 244
Score = 33.9 bits (74), Expect = 4.5
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +2
Query: 458 GYVVFLLI*KKNSRGGPYPIRPIVSRITIHWPS--FYNVVTGENLGVT 595
G V++ KKN RG Y RPI+SR+ +H S F++ ++ E + ++
Sbjct: 180 GEPVYISALKKNWRGDKYEERPIISRLALHAHSLKFFHPISKEKIEIS 227
>UniRef50_A3N3H1 Cluster: Putative uncharacterized protein; n=2;
Actinobacillus pleuropneumoniae|Rep: Putative
uncharacterized protein - Actinobacillus
pleuropneumoniae serotype 5b (strain L20)
Length = 236
Score = 33.9 bits (74), Expect = 4.5
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 343 VKVMKKFCIQKREDYTKYNKLSRDIRELAKR 251
VK+ KK+C + R DY K+NK ++ + AK+
Sbjct: 121 VKIEKKWCNELRADYQKFNKATKTAKSAAKK 151
>UniRef50_P05475 Cluster: Uncharacterized killer plasmid pGKl-2
protein 9; n=2; Saccharomycetaceae|Rep: Uncharacterized
killer plasmid pGKl-2 protein 9 - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 453
Score = 33.9 bits (74), Expect = 4.5
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Frame = -2
Query: 439 VPKMVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIREL 260
+ + + +K+HE + + +VD+ +NN+ + K M ++ Y NKL + I E
Sbjct: 290 IKEKYKNIKYHEDEKIIEVDY-----NNNVVKQKDMAEY-------YCYNNKLIQKIEEP 337
Query: 259 AKR*KTSIQIMNSGQSQVL----NFWKNFTKLD*YRQDGI--LPW 143
K K QI+N +V N WKN L R DGI LPW
Sbjct: 338 VKLPKIEAQILNKRNERVEVLIDNEWKN---LAGNRIDGIPTLPW 379
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 33.9 bits (74), Expect = 4.5
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = -1
Query: 209 SAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGH 30
S ++L KL + G+I ++ ++ + RRL ++R ++ T+ +A +FI GH
Sbjct: 79 SEEILSKLIRYGIIKADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGH 138
Query: 29 V 27
+
Sbjct: 139 I 139
>UniRef50_Q9U0H9 Cluster: Putative uncharacterized protein PFD0540c;
n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein PFD0540c - Plasmodium falciparum
(isolate 3D7)
Length = 977
Score = 33.1 bits (72), Expect = 7.9
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = -2
Query: 391 KKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAKR*KTSIQIMNSGQS 212
KK+ + K+D SE+K ++ + I+ E+ +L +I + QI N+ +
Sbjct: 247 KKIPILESKIDILESEIKELQLYKIKDTENIQLVKELKDEI--------LNYQIENNKLN 298
Query: 211 QVLNFWKNFTKL 176
+ +N WKNF+KL
Sbjct: 299 EQINEWKNFSKL 310
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 778,096,221
Number of Sequences: 1657284
Number of extensions: 15652558
Number of successful extensions: 36737
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 35513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36719
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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