Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0340.Seq
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    74   2e-14
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    30   0.32 
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   3.9  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    26   5.2  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   9.1  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   9.1  
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    25   9.1  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   9.1  

>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 32/83 (38%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
 Frame = -1

Query: 272 YQRARKKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLA-LATNVSASSFCRRRLPV 96
           +++   ++  LDP + FR +    LLEKL+ +G++P++  ++ +    + S+ CRRRLPV
Sbjct: 54  FRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPV 113

Query: 95  LMVRNKMSETIKEATKFIEQGHV 27
           +M + +MS+ + EAT+ IEQGHV
Sbjct: 114 IMCKLRMSQVVSEATRLIEQGHV 136



 Score = 62.5 bits (145), Expect = 6e-11
 Identities = 31/60 (51%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
 Frame = -2

Query: 427 VRKLKFHEGKLLKKVDFISWKLD-NNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAKR 251
           +R LK HE KLL+KVDF+++K D NN  +V VM+++ I KRE+Y KYN +    R+LA R
Sbjct: 1   MRILKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHR 60


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 26/86 (30%), Positives = 39/86 (45%)
 Frame = +1

Query: 34  PCSINFVASLIVSDILFRTINTGSLRLQKELAETLVAKARSHLVGINPIW*SFSKS*ALD 213
           P  INF+ S  +  +  R +  GS  L K +A  +V K     VG+  I  ++ +  A+ 
Sbjct: 144 PEVINFLLSTEIIPLCLRIMENGS-ELSKTVAIFIVQKFLCDDVGLQYICQTYERFYAVA 202

Query: 214 SVLNSLFGSRSFIFLRAL*YHETICY 291
           SVLN++       F   L  H   CY
Sbjct: 203 SVLNNMVMQLVDSFAFRLLKHVIRCY 228


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 380 VYFL*QFPFMKFKFSDHFGNTEHK 451
           +Y+L   PF++  +  HFG T+H+
Sbjct: 649 MYYLYGSPFLEHTYLYHFGRTDHR 672


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 439 VPKMVRKLKFHEGKLLKKVDFISWKLDNN 353
           + K +  LK H+  +L  +DFI W  DN+
Sbjct: 106 IDKTLEWLKEHQDDVLGGIDFILWTGDNS 134


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 152 LALATNVSASSFCRRRLPVLMVRNKMSETI 63
           L   +N S   FC R L ++  RNK+S  I
Sbjct: 618 LTWVSNPSPGDFCLRDLNIVFPRNKLSIVI 647


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 227 EFRTESSAQLLEKLYQIG 174
           EF+  S+  +LEKLY+IG
Sbjct: 626 EFQKNSTFDMLEKLYEIG 643


>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 191 KLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRN 81
           K+Y IG +   + L    +V+  SFC    P L  +N
Sbjct: 130 KIYAIGCLFIAFKLTSDYSVAKKSFCENLAPSLSTKN 166


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 638 RNSEEGRNDXPFQQLRAELRNGKCKR*NLLKSRXILVKQVHFNH 769
           RNSEE  ++     L+  +   K K   +L+S+ ILV     +H
Sbjct: 516 RNSEEANDENDETNLKIPIPEKKRKFQEVLQSKNILVSSTEDSH 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,262,013
Number of Sequences: 5004
Number of extensions: 67968
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)