Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0340.Seq
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028     51   1e-06
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605...    29   5.4  
03_06_0517 + 34466743-34466879,34468478-34468588,34468997-344690...    29   5.4  

>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
          Length = 157

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 21/56 (37%), Positives = 38/56 (67%)
 Frame = -2

Query: 427 VRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIREL 260
           +RKL+FHE KLLKK +F+ +K +    +  V +++ + +R+DY KYN +   +++L
Sbjct: 1   MRKLRFHEQKLLKKTNFLDFKREKGHRDAIVTQRYLLVERDDYKKYNGICLMVQKL 56



 Score = 35.5 bits (78), Expect = 0.047
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = -1

Query: 110 RRLPVLMVRNKMSETIKEATKFIEQGHV 27
           RRL  +MV+ K +E +KEA  +I+QGHV
Sbjct: 82  RRLATVMVKLKFAEHLKEAVTYIQQGHV 109


>04_04_1400 -
           33259716-33260069,33260172-33260219,33260471-33260596,
           33260850-33260900,33260963-33261055,33261217-33261272,
           33261465-33261522,33262306-33262365,33262513-33262623,
           33263368-33263949,33264026-33264097
          Length = 536

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 24/89 (26%), Positives = 41/89 (46%)
 Frame = -2

Query: 478 KQKHYITYILVLGVPKMVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDY 299
           KQ+H+ T +  L     + KL+    +L K +    W LD  + +V  +++    K    
Sbjct: 237 KQRHHSTRMEALA---RLAKLEVTNAELAKSLAREQWNLDLQVDQVAQLREEVDMKTLTQ 293

Query: 298 TKYNKLSRDIRELAKR*KTSIQIMNSGQS 212
            KY       R++AK  KTS  ++N  +S
Sbjct: 294 DKYK------RKIAKMQKTSPLLVNEIES 316


>03_06_0517 +
           34466743-34466879,34468478-34468588,34468997-34469079,
           34469287-34469404,34469503-34469714,34470167-34470651,
           34470731-34470801,34470898-34470955,34471161-34471192,
           34471193-34471449,34471820-34471974,34472353-34472636,
           34472725-34472842,34473574-34473756,34473848-34474162
          Length = 872

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 566 VVTGENLGVTQLNRLAAHPPFAXWRNSEEGRNDXPFQQLR 685
           +VT  N  V   +  + H P   WR+S +GRN+  ++  R
Sbjct: 686 IVTTMNGNVFCFSTPSPHHPLKEWRSSNQGRNNAAYRYNR 725


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,791,065
Number of Sequences: 37544
Number of extensions: 425763
Number of successful extensions: 936
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)