Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0340.Seq
         (770 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK223121-1|BAD96841.1|  184|Homo sapiens U3 snoRNP protein 3 hom...    89   2e-17
BC011745-1|AAH11745.1|  184|Homo sapiens IMP3, U3 small nucleola...    88   3e-17
BC006487-1|AAH06487.1|  184|Homo sapiens IMP3, U3 small nucleola...    88   3e-17
AY050497-1|AAL06639.1|  184|Homo sapiens BRMS2 protein.                88   3e-17
AK001830-1|BAA91929.1|  184|Homo sapiens protein ( Homo sapiens ...    88   3e-17

>AK223121-1|BAD96841.1|  184|Homo sapiens U3 snoRNP protein 3
           homolog protein.
          Length = 184

 Score = 88.6 bits (210), Expect = 2e-17
 Identities = 37/61 (60%), Positives = 56/61 (91%), Gaps = 1/61 (1%)
 Frame = -2

Query: 430 MVRKLKFHEGKLLKKVDFISWKL-DNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAK 254
           MVRKLKFHE KLLK+VDF++W++ D+N+ E++V++++ +Q+REDYT+YN+LSR +RELA+
Sbjct: 1   MVRKLKFHEQKLLKRVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60

Query: 253 R 251
           R
Sbjct: 61  R 61



 Score = 87.4 bits (207), Expect = 5e-17
 Identities = 37/77 (48%), Positives = 58/77 (75%)
 Frame = -1

Query: 257 KKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNK 78
           ++++DL   ++FR  +SA LL+KLY +GL+PTR  L L   V+ASSFCRRRLP ++++ +
Sbjct: 60  RRLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLR 119

Query: 77  MSETIKEATKFIEQGHV 27
           M++ ++ A  F+EQGHV
Sbjct: 120 MAQHLQAAVAFVEQGHV 136


>BC011745-1|AAH11745.1|  184|Homo sapiens IMP3, U3 small nucleolar
           ribonucleoprotein, homolog (yeast) protein.
          Length = 184

 Score = 88.2 bits (209), Expect = 3e-17
 Identities = 37/61 (60%), Positives = 56/61 (91%), Gaps = 1/61 (1%)
 Frame = -2

Query: 430 MVRKLKFHEGKLLKKVDFISWKL-DNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAK 254
           MVRKLKFHE KLLK+VDF++W++ D+N+ E++V++++ +Q+REDYT+YN+LSR +RELA+
Sbjct: 1   MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60

Query: 253 R 251
           R
Sbjct: 61  R 61



 Score = 87.4 bits (207), Expect = 5e-17
 Identities = 37/77 (48%), Positives = 58/77 (75%)
 Frame = -1

Query: 257 KKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNK 78
           ++++DL   ++FR  +SA LL+KLY +GL+PTR  L L   V+ASSFCRRRLP ++++ +
Sbjct: 60  RRLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLR 119

Query: 77  MSETIKEATKFIEQGHV 27
           M++ ++ A  F+EQGHV
Sbjct: 120 MAQHLQAAVAFVEQGHV 136


>BC006487-1|AAH06487.1|  184|Homo sapiens IMP3, U3 small nucleolar
           ribonucleoprotein, homolog (yeast) protein.
          Length = 184

 Score = 88.2 bits (209), Expect = 3e-17
 Identities = 37/61 (60%), Positives = 56/61 (91%), Gaps = 1/61 (1%)
 Frame = -2

Query: 430 MVRKLKFHEGKLLKKVDFISWKL-DNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAK 254
           MVRKLKFHE KLLK+VDF++W++ D+N+ E++V++++ +Q+REDYT+YN+LSR +RELA+
Sbjct: 1   MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60

Query: 253 R 251
           R
Sbjct: 61  R 61



 Score = 87.4 bits (207), Expect = 5e-17
 Identities = 37/77 (48%), Positives = 58/77 (75%)
 Frame = -1

Query: 257 KKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNK 78
           ++++DL   ++FR  +SA LL+KLY +GL+PTR  L L   V+ASSFCRRRLP ++++ +
Sbjct: 60  RRLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLR 119

Query: 77  MSETIKEATKFIEQGHV 27
           M++ ++ A  F+EQGHV
Sbjct: 120 MAQHLQAAVAFVEQGHV 136


>AY050497-1|AAL06639.1|  184|Homo sapiens BRMS2 protein.
          Length = 184

 Score = 88.2 bits (209), Expect = 3e-17
 Identities = 37/61 (60%), Positives = 56/61 (91%), Gaps = 1/61 (1%)
 Frame = -2

Query: 430 MVRKLKFHEGKLLKKVDFISWKL-DNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAK 254
           MVRKLKFHE KLLK+VDF++W++ D+N+ E++V++++ +Q+REDYT+YN+LSR +RELA+
Sbjct: 1   MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60

Query: 253 R 251
           R
Sbjct: 61  R 61



 Score = 87.4 bits (207), Expect = 5e-17
 Identities = 37/77 (48%), Positives = 58/77 (75%)
 Frame = -1

Query: 257 KKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNK 78
           ++++DL   ++FR  +SA LL+KLY +GL+PTR  L L   V+ASSFCRRRLP ++++ +
Sbjct: 60  RRLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLR 119

Query: 77  MSETIKEATKFIEQGHV 27
           M++ ++ A  F+EQGHV
Sbjct: 120 MAQHLQAAVAFVEQGHV 136


>AK001830-1|BAA91929.1|  184|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10968 fis, clone PLACE1000863, moderately
           similar to PUTATIVE MITOCHONDRIAL 40S RIBOSOMAL PROTEIN
           YHR148W. ).
          Length = 184

 Score = 88.2 bits (209), Expect = 3e-17
 Identities = 37/61 (60%), Positives = 56/61 (91%), Gaps = 1/61 (1%)
 Frame = -2

Query: 430 MVRKLKFHEGKLLKKVDFISWKL-DNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAK 254
           MVRKLKFHE KLLK+VDF++W++ D+N+ E++V++++ +Q+REDYT+YN+LSR +RELA+
Sbjct: 1   MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60

Query: 253 R 251
           R
Sbjct: 61  R 61



 Score = 87.4 bits (207), Expect = 5e-17
 Identities = 37/77 (48%), Positives = 58/77 (75%)
 Frame = -1

Query: 257 KKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNK 78
           ++++DL   ++FR  +SA LL+KLY +GL+PTR  L L   V+ASSFCRRRLP ++++ +
Sbjct: 60  RRLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLR 119

Query: 77  MSETIKEATKFIEQGHV 27
           M++ ++ A  F+EQGHV
Sbjct: 120 MAQHLQAAVAFVEQGHV 136


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,281,427
Number of Sequences: 237096
Number of extensions: 2382483
Number of successful extensions: 4207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4202
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)