Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0340.Seq
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    66   2e-11
U00037-2|AAA50662.1|  212|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF140272-1|AAD34863.1|  212|Caenorhabditis elegans NADH oxidored...    29   3.7  
Z81487-7|CAB04001.2|  495|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AL021470-4|CAA16294.2|  495|Caenorhabditis elegans Hypothetical ...    28   6.4  

>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/58 (51%), Positives = 41/58 (70%)
 Frame = -2

Query: 430 MVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELA 257
           MVRKLK HE KLLKK DF+SW++D    +  +++KF ++KRE Y  YN L+   RE+A
Sbjct: 1   MVRKLKTHEQKLLKKTDFMSWQVDQQGKQGDMLRKFYVKKREHYALYNTLAAKSREVA 58



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 32/75 (42%), Positives = 47/75 (62%)
 Frame = -1

Query: 251 IKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMS 72
           IK+L  ++ FR++ +  +L K Y  GL+PT   L     V+ +SF RRRLPV+M    M 
Sbjct: 61  IKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGKVTGASFARRRLPVVMRNIGMC 120

Query: 71  ETIKEATKFIEQGHV 27
           E++K A+  +EQGHV
Sbjct: 121 ESVKTASDLVEQGHV 135


>U00037-2|AAA50662.1|  212|Caenorhabditis elegans Hypothetical
           protein T20H4.5 protein.
          Length = 212

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 236 PNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCR 111
           PN E+ TE+  +LL    ++ L   RW+  LA+N+ A    R
Sbjct: 171 PNFEYSTETHEELLYNKEKLLLNGDRWEPELASNLQAEYLYR 212


>AF140272-1|AAD34863.1|  212|Caenorhabditis elegans NADH
           oxidoreductase complex I 23.8kDa subunit protein.
          Length = 212

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 236 PNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCR 111
           PN E+ TE+  +LL    ++ L   RW+  LA+N+ A    R
Sbjct: 171 PNFEYSTETHEELLYNKEKLLLNGDRWEPELASNLQAEYLYR 212


>Z81487-7|CAB04001.2|  495|Caenorhabditis elegans Hypothetical
           protein Y17D7A.4 protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/83 (21%), Positives = 39/83 (46%)
 Frame = -2

Query: 451 LVLGVPKMVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRD 272
           +++ V ++ ++L  H G+ +     I   + N I+     K+F + KR+++     L   
Sbjct: 143 ILMEVEELFKELDAHGGEEIDLPKLIDRSVGNVINLTLFNKRFDMDKRDEFAHLKSLIDG 202

Query: 271 IRELAKR*KTSIQIMNSGQSQVL 203
           +R +  + +  IQ +    S VL
Sbjct: 203 MRNVTSQFRYLIQYLVPWTSTVL 225


>AL021470-4|CAA16294.2|  495|Caenorhabditis elegans Hypothetical
           protein Y17D7A.4 protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/83 (21%), Positives = 39/83 (46%)
 Frame = -2

Query: 451 LVLGVPKMVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRD 272
           +++ V ++ ++L  H G+ +     I   + N I+     K+F + KR+++     L   
Sbjct: 143 ILMEVEELFKELDAHGGEEIDLPKLIDRSVGNVINLTLFNKRFDMDKRDEFAHLKSLIDG 202

Query: 271 IRELAKR*KTSIQIMNSGQSQVL 203
           +R +  + +  IQ +    S VL
Sbjct: 203 MRNVTSQFRYLIQYLVPWTSTVL 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,105,529
Number of Sequences: 27780
Number of extensions: 382838
Number of successful extensions: 959
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)