Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0340.Seq
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei...    83   1e-16
At5g41620.1 68418.m05057 expressed protein weak similarity to mi...    31   1.1  
At2g27920.2 68415.m03383 serine carboxypeptidase S10 family prot...    31   1.1  
At2g27920.1 68415.m03384 serine carboxypeptidase S10 family prot...    31   1.1  
At1g64180.1 68414.m07270 intracellular protein transport protein...    31   1.1  
At5g38300.1 68418.m04622 expressed protein predicted protein, rice     28   5.9  

>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
           40S RIBOSOMAL PROTEINs - different species
          Length = 182

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 40/81 (49%), Positives = 53/81 (65%)
 Frame = -1

Query: 269 QRARKKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLM 90
           Q+    +K +DP + FR + +  LLEKLY +G+IPTR  L L   +S SSFCRRRL  ++
Sbjct: 54  QKLTNIMKQMDPADPFRIQMTDMLLEKLYNMGVIPTRKSLTLTERLSVSSFCRRRLSTVL 113

Query: 89  VRNKMSETIKEATKFIEQGHV 27
           V  K +E  KEA  +IEQGHV
Sbjct: 114 VHLKFAEHHKEAVTYIEQGHV 134



 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 24/56 (42%), Positives = 40/56 (71%)
 Frame = -2

Query: 427 VRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIREL 260
           +RKLK+HE KL+KKV+F+ WK + N  E ++  ++ +  R+DY KY+ L R +++L
Sbjct: 1   MRKLKYHEKKLIKKVNFLEWKREGNHRENEITYRYHMGSRDDYKKYSGLCRMVQKL 56


>At5g41620.1 68418.m05057 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 (GI:2773363)
           [Drosophila melanogaster]; weak similarity to
           Synaptonemal complex protein 1 (SCP-1 protein)
           (Swiss-Prot:Q15431) [Homo sapiens]; weak similarity to
           DNA double-strand break repair rad50 ATPase.
           (Swiss-Prot:P58301) [Pyrococcus furiosus]
          Length = 543

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 427 VRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKL 281
           VRK    E KL K+ + +  K+   +SEVK     C+++ E  +K NK+
Sbjct: 197 VRKALEDERKLRKRSESLHRKMARELSEVKSSLSNCVKELERGSKSNKM 245


>At2g27920.2 68415.m03383 serine carboxypeptidase S10 family protein
           similar to retinoid-inducible serine carboxypeptidase
           precursor (GI:15146429) [Mus musculus]
          Length = 389

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 385 VDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELA 257
           VDF ++ LD  +  V +     I+K E   KY++   D+R L+
Sbjct: 194 VDFYNFLLDTGMDPVSLTTSLKIKKEEKIKKYSRYLNDMRSLS 236


>At2g27920.1 68415.m03384 serine carboxypeptidase S10 family protein
           similar to retinoid-inducible serine carboxypeptidase
           precursor (GI:15146429) [Mus musculus]
          Length = 461

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 385 VDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELA 257
           VDF ++ LD  +  V +     I+K E   KY++   D+R L+
Sbjct: 266 VDFYNFLLDTGMDPVSLTTSLKIKKEEKIKKYSRYLNDMRSLS 308


>At1g64180.1 68414.m07270 intracellular protein transport protein
           USO1-related similar to Rap8 (GI:2326183) [Rhynchosciara
           americana]; contains weak similarity to
           Swiss-Prot:P25386 intracellular protein transport
           protein USO1 [Saccharomyces cerevisiae]
          Length = 593

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = -2

Query: 406 EGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNK-LSRDIRELAKR*KTSIQI 230
           E KL K+ + +  KL   +SEVK     C+++ E  T+  K L R   E AK  K+  + 
Sbjct: 272 ERKLRKRSESLYRKLAQELSEVKSTLSNCVKEMERGTESKKILERLCDEFAKGIKSYERE 331

Query: 229 MNSGQSQVLNFWKNFTKLD 173
           ++  + ++   WK + + D
Sbjct: 332 IHGLKQKLDKNWKGWDEQD 350


>At5g38300.1 68418.m04622 expressed protein predicted protein, rice
          Length = 263

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 485 KKNSRGGPYPIRPIV-SRITIHWPSFYNVVTGENLGVTQLNRLAAHPPFAXWRN 643
           KK SR G  P++  V S +    P F  V+  EN     +N +   PP +  RN
Sbjct: 128 KKQSRFGFSPLKKAVPSSLAQSVPDFSAVIRKENRRPVNINTITPPPPTSKSRN 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,020,311
Number of Sequences: 28952
Number of extensions: 352735
Number of successful extensions: 809
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)