Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0287.Seq
         (825 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    40   0.076
UniRef50_Q8IHZ2 Cluster: Putative uncharacterized protein; n=2; ...    33   6.6  
UniRef50_A6W593 Cluster: Transcriptional regulator, TetR family;...    33   8.7  
UniRef50_Q7PML6 Cluster: ENSANGP00000014244; n=1; Anopheles gamb...    33   8.7  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 39.9 bits (89), Expect = 0.076
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +2

Query: 368 AGWWYPPARTYKRSYHQ*LCKL*FCG 445
           A WWY PART+KRSYH+  C   +CG
Sbjct: 569 AEWWYLPARTHKRSYHRYQCS--YCG 592


>UniRef50_Q8IHZ2 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 689

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -1

Query: 252 MSMGSSNHLTSSGLVQKKN*VLKAQWTFRD-FDFYVPLQTNSTLIFRF 112
           +S G +N ++ SG++ + N VLK  +   D FD Y+ L  N +L F +
Sbjct: 57  LSGGKNNMMSKSGIMDRTNVVLKNSFEKGDIFDIYIFLSNNQSLDFEY 104


>UniRef50_A6W593 Cluster: Transcriptional regulator, TetR family;
           n=1; Kineococcus radiotolerans SRS30216|Rep:
           Transcriptional regulator, TetR family - Kineococcus
           radiotolerans SRS30216
          Length = 222

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +3

Query: 297 SQV*LQRLPHPSNRNALLLHGRNRQGGGTHPRGLTRG 407
           +Q  L  LP P  R A    G  R GGGT P G +RG
Sbjct: 185 AQAALDGLPRPPGRAAGPARGTTRSGGGTRPGGGSRG 221


>UniRef50_Q7PML6 Cluster: ENSANGP00000014244; n=1; Anopheles gambiae
            str. PEST|Rep: ENSANGP00000014244 - Anopheles gambiae
            str. PEST
          Length = 1219

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 321  PHPSNRNALLLHGRNRQGGGTHPRGLTRGPTTSNYANYNFAGFI 452
            PHP+N N    H  N  GGG H    +    T+ + N N  G I
Sbjct: 957  PHPANNNLHNHHPNNLAGGGNHHHVNSNNLVTTTFNNLNGGGGI 1000


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 807,815,074
Number of Sequences: 1657284
Number of extensions: 16496244
Number of successful extensions: 32791
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32788
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71324098314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)