Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0287.Seq
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    28   1.4  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    28   1.8  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   9.9  

>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 381 YHHPAYFCREAVMRFGLKGGAAVVTIPETLELISQGG 271
           +  P+ F  E V+   L GG AVV +  TLE I Q G
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 237 SNHLTSSGLVQKKN*VLKAQWTFRDFDFYVPLQTNST 127
           S + TSS L  +K    K  W+F++F F  P +  ST
Sbjct: 76  SKNPTSSSLSTRKRWRQKRLWSFKNFPFRPPTRLTST 112


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
 Frame = +1

Query: 157 IEVTKCPLSF*YLIFFLDKPT*C*VVTGAHRHLNVNAPPTLRYKF*GLRYSYNGCPTLQT 336
           I ++K    F +    L+  T C V+  AH H++V  PP +   F       N    L+ 
Sbjct: 274 IALSKATGDFLWQGLSLELFTVCLVIM-AHLHVDVQIPPNILSMFPSYNDRLNAFGPLKF 332

Query: 337 ETHYCFTAEIGRVV--VPTRADLQ--EVLPPVIMQIIILRVSFLL 459
           +    F  E+  VV  +  ++ LQ  + +P +     ILR + LL
Sbjct: 333 DALLNFITEMRNVVDQLYQKSTLQPNDAVPGLCFSESILRYAHLL 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,686
Number of Sequences: 5004
Number of extensions: 70013
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)