Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0287.Seq
         (825 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1461 - 27299891-27301870                                         30   1.9  
01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664           28   7.8  

>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +3

Query: 324 HPSNRNALLLHGRNRQGGGTHPRGLTRGPTTS 419
           H ++    LL GR R GGG H RGL   P  S
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVS 313


>01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664
          Length = 582

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +3

Query: 309 LQRLPHPSNRNALLLHGRNRQGGGTHPRGLTRGPTTSNYANYNFAG 446
           LQ LP P   +    HG    GGG    G T+    S  ANY+F G
Sbjct: 395 LQSLPDPMFHHQQHRHG----GGGGGGNGTTQQALFSGAANYSFGG 436


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,720,943
Number of Sequences: 37544
Number of extensions: 464022
Number of successful extensions: 947
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)